SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52580 | AT | Annotation by Michelle Graham. TAIR10: RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=673 | SoyBase | E_val: 0 | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| KOG2197 | KOG | Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins | JGI | ISS | |
| PTHR22957 | Panther | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | JGI | ISS | |
| PTHR22957:SF34 | Panther | TBC1 DOMAIN FAMILY MEMBER 15, 17 | JGI | ISS | |
| PF00566 | PFAM | TBC domain | JGI | ISS | |
| PF12068 | PFAM | Domain of unknown function (DUF3548) | JGI | ISS | |
| UniRef100_G7JE75 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TBC1 domain family member n=1 Tax=Medicago truncatula RepID=G7JE75_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E0B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E0B4 related cluster n=1 Tax=unknown RepID=UPI000233E0B4 | SoyBase | E_val: 0 | ISS |
|
Glyma17g12070 not represented in the dataset |
Glyma17g12070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g22760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g112200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g12070.2 sequence type=CDS gene model=Glyma17g12070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAGAATCGGAGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCTCGGAACGGTGCTGAAATTGTATTTTCGAAGGACAATGTTGCAATTCATCCGACTCAATTTGCGTCTGAAAGAATCAGTGGAAGACTGAAATTGATTAAGCAAAGTTCGTCCTTGTTTATGACTTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGATAAAGACAGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAGGACCTTCTTATCCTCCATTATATTTTTATAGTGGAGGAGTCAAAGAATTCCTTGCTACAATAAAGCAACATGTTCTTCTTGTGAGATCTGAAGAAGATGCCAACGTATTCCTTGTGAATGATTTTCAGAATACACTGCAGAGGACTTTGTCTTCCTTGGAGATGCCCAGGGCTGTTCCCCTTGCATGTGGACCTTCAAATACATCAGTTGATGAATCCATTTTGATTGAGAACCAAGAAAGAGCTGATAATGGTGCCAATGATGGAAGATTTAGTGTTAATCAGTTCCATGGGAGACCAAGACATAAAGTAGATCCTGCTCGAGACCTCTCTATTCAAGTTCTAGAGAAGTTTTCTCTTGTCACAAGATTTGCCCGTGAAACAACTTCACAACTTTTTGGAGAAAACCAGAGTAATGGATTTAGTCCCATTGACAGGAGGACCCATATCCAGACTAACCTTGATCATCCTAAGTCTTCCAATGTTGAGGAAAATACCTCTGTTGAAAGTCCTGTTGTCTTGGATTCTCAGGAGTTCGATAATTTATCGTTAGTATGGGGAAAACCAAGGCAACCCCCTTTGGGTTCTGAAGAGTGGAATGCCTTCTTGGATTCTGAAGGACGAGTCACAGATTCAGAAGCTTTGAGAAAGAGAGTATTTTATGGTGGACTTGACCACGAATTACAAAATGAGGTATGGGGTTTGCTTTTGGGATATTATCCATATGAATCAACATATGCTGAGAGAGAATTCCTGAAGTCAGTTAAGAAGTTAGAATACGAGAACATAAAGAACCAGTGGCAGAGTATATCCTCAGCACAGGCTAAAAGATTCACAAAATTCAGGGAAAGGAAAGGGCTTATTGAGAAAGATGTGGTGAGAACTGATAGATCACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCAGAGGCATTTTGGTGTTTTGTTGCTCTAATGGAACGTCTCGGACCCAATTTTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGACTGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACATTATCCGTCTGAGCATTTGCACCTGTATGTATGTGTGGCAATCTTGAAACGATATCGTGGTAAAATAATTGGAGAGCAAATGGACTTCGACACCCTTTTGAAGTTTATTAATGAGTTAAGTGGTCACATCGATCTTGATGCAACCCTCAGAGATGCAGAGGCTCTATGTATATGTGCCGGTGAGAACGGTGCTGCTCGTATACCCCCTGGAACCCCACCGTCGTTGCCTCATGAAGATGGTTCTTTTTACGCCCAACAAGAACAAGATGAAATATTGTAA
>Glyma17g12070.2 sequence type=predicted peptide gene model=Glyma17g12070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLESELHDLSDDADYAASQQQGSASVMLRSDSAKQSSPRNGAEIVFSKDNVAIHPTQFASERISGRLKLIKQSSSLFMTWIPYKAHSSEARLSDKDRNLYTIRAVPFTDIRSIRRHNPALGWQYVIVVLSSGPSYPPLYFYSGGVKEFLATIKQHVLLVRSEEDANVFLVNDFQNTLQRTLSSLEMPRAVPLACGPSNTSVDESILIENQERADNGANDGRFSVNQFHGRPRHKVDPARDLSIQVLEKFSLVTRFARETTSQLFGENQSNGFSPIDRRTHIQTNLDHPKSSNVEENTSVESPVVLDSQEFDNLSLVWGKPRQPPLGSEEWNAFLDSEGRVTDSEALRKRVFYGGLDHELQNEVWGLLLGYYPYESTYAEREFLKSVKKLEYENIKNQWQSISSAQAKRFTKFRERKGLIEKDVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMDNESEAFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWILIQFKREFEYEKTMRLWEVLWTHYPSEHLHLYVCVAILKRYRGKIIGEQMDFDTLLKFINELSGHIDLDATLRDAEALCICAGENGAARIPPGTPPSLPHEDGSFYAQQEQDEIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
