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Report for Sequence Feature Glyma17g12000

Feature Type:gene_model
Chromosome:Gm17
Start:9026963
stop:9027993
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g12000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
UniRef100_UPI000233EC64UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC64 related cluster n=1 Tax=unknown RepID=UPI000233EC64 SoyBaseE_val: 3.00E-96ISS

Expression Patterns of Glyma17g12000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g12000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g12000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g12000
>Glyma17g12000.1   sequence type=CDS   gene model=Glyma17g12000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGAGACACAGCCCAGCAATGAAACTCTCGTACATGAAGCACAGAACATCAATGATGTGGTCATGTCTGAAGCATTGCCTGAAAATGAGTTGGTAAATTCTACAGCAGATCCCAACAATCATCTCTCTCATCCAGAATCTTTTTCTCATGATCATCAGTATACTAATTTACACATGATTCCTGAACTTGAATCGCTGCCCAACTCTGATCCATTGCCTAGTTCTGAACCAATGCAAGACATTCATCTCACAGACATCAAACCGTTACCTCATAATCATCTGGCCCAGTATGATACACTTCCCAACAATCATCATATGGACCATTCTGAGGCGGTGTCCAACCATCAACTAACTCACTTTGAGACACTATCCAATGAACAGCTAGCCAATTCTCATTTGTTGCCTGACTACGACGGGCTACAAAATAGTGAAACACTACACGACCATCCGATAGTTAATTCTCAACCACTCTATGAGATAGTCAATGCTAGCAACATACCCAACTATGGGATAGTAAATGCTGAAACTCCATTGAACAGTGAGGAAGCTACTCCAAAAACTTAG
Predicted protein sequences of Glyma17g12000
>Glyma17g12000.1   sequence type=predicted peptide   gene model=Glyma17g12000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPETQPSNETLVHEAQNINDVVMSEALPENELVNSTADPNNHLSHPESFSHDHQYTNLHMIPELESLPNSDPLPSSEPMQDIHLTDIKPLPHNHLAQYDTLPNNHHMDHSEAVSNHQLTHFETLSNEQLANSHLLPDYDGLQNSETLHDHPIVNSQPLYEIVNASNIPNYGIVNAETPLNSEEATPKT*






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