Glyma17g11970 - SoyBase

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Report for Sequence Feature Glyma17g11970

Feature Type:	gene_model
Chromosome:	Gm17
Start:	9015075
stop:	9018145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20250	AT	Annotation by Michelle Graham. TAIR10: Raffinose synthase family protein \| chr5:6833730-6836635 FORWARD LENGTH=844	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PF05691	PFAM	Raffinose synthase or seed inhibition protein Sip1	JGI		ISS
UniRef100_G7JFC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed imbibition protein n=1 Tax=Medicago truncatula RepID=G7JFC4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MU56_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11970 not represented in the dataset	Glyma17g11970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11970

Paralog	Evidence	Comments
Glyma13g22890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g111400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11970

Limit To All Plant Sequences

>Glyma17g11970.6   sequence type=transcript   gene model=Glyma17g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTTTTTCTTTCTTAATTGCGCGGGCGTGGATCCAACGTGGCGACTCCATCCAATGTAAAAAAAGAGCGAGTTGGACCAATCGCAGATTTTTTATTATTTAAGACAGTTAGCAACACCGCAGCAGACGATGATGGTTTGATGAGTGTTAAGGAAGAACATTTTAACAATGGTTTCAAATCTATGCCATAGTTCTTATCTCCTTATAAATACCAAATCCCAATTTCTTTCTCTCCATCCACACACTTTCCTTTCAGGCACCCATCTAAGATTACCCAATAAGAAGCAACTCTCAATTTCTGACATTTCTTCAATCGAGTGTTTCCAGTGGTATCATCCAAGAGGAACGTAGGGGAAGATAAAGAGATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGCCGGAGAACGTGGTGGAGACATCGACGGTGGAAGGAATGTTTCTCGGAGTGGATTTCGAGAAGGAAGACAGTAGGCAGGTGGTTTCGTTGGGAACGTTGAAGGACGTCCGGTTCATGGCGTGCTTCCGGTTCAAGCTGTGGTGGATGGCCCAGAAAATGGGAGATCGAGGAAGGGACATTCCGTTGGAGACTCAATTTCTGTTGGTGGAAACCAAAGATGGGTCCCACCTGGAGTCAGATAACGACAAAAACCAGAACCAGATCGTGTACACAGTCTTTCTACCTCTCGTGGAAGGCTCATTCAGAGCGTGCCTCCAGGGTGACTCCAACGACCAACTCCAGCTCTGCCTCGAGAGTGGCGACGTCGACATTAAAACGTCGTCGTTCACCCACGCTCTCTTCATCAGCGCCGGCACCGACCCATTCGCCACCATTCACCACGCATTCCGTTCAGTTCGGAACCACCTCAAGACTTTCCGCCTCCGCCACGAGAAGAAACTCCCTGGCATCGTGGATTGCTTCGGCTGGTGCACTTGGGATGCTTTCTACCAGGAAGTCACTCAGGAAGGAGTCGAGGCCGGAATTCAGTCCCTCGCAGGCGGCGGCACGCCGCCGAAGTTCGTCATCATCGACGACGGCTGGCAGTCGGTGGGCGGTGACGACAAGAACTCAAATTCGTTGCAGAGGCTAACTGGAATAAAAGAGAACGCGAAGTTCCAGAAGAAGGAGGAGCCAGAATTAGGGATTAAGAACATCGTGGAGATAGCGAAGAAGAAGCATTCAGTGAAAAACGTGTACGTATGGCACGCGATCACGGGTTACTGGGGAGGGGTTCGTCCAGGGGTGAAGGAAATGGAAGAGTACGGCTCCGTAATGAAGTACCCGAACGTGTCGAGTGGAGTAACAGAGAACGAGCCCACGTGGAAAGTGGACCCGTTAGCGGTTCAGGGGTTGGGCCTGGTGAACCCGAAGAAGGTGTTCACGTTTTACGACCAATTACACAGTTATCTGGCGTCCGCGGGTGTCGACGGCGTTAAGGTGGACGTGCAATGCATCTTAGAGACTCTGGGTGCAGGACTCGGTGGAAGGGTGGAACTCACGAGGAATTACCATCAGGCCCTTGACGCTTCGATTTCTAGAAACTTCCCTGACAATGGGTGCATCGCCTGCATGAGCCACAACACGGACGCGCTCTACTGCTCCAAACAGACGGCGGTGGTGAGGGCTTCCGATGATTTCTACCCGCGTGATCCGGTGTCGCACACTATCCACGTGGCGTCCGTGGCGTACAATAGCGTTTTCCTTGGGGAGATTATGTTGCCGGATTGGGATATGTTTCACTCCCTTCACCCTGCTGCGGAGTACCACGCTTCCGCTAGGGCCATCAGCGGTGGGCCCATCTACGTCAGCGACGCGCCGGGGAAGCATAACTTTGATCTGCTCAAGAAACTGGTCTTGCCCGATGGGTCGATTTTACGGGCCCGTCTACCAGGAAGGCCCACTAAGGATTGCTTGTTCACCGACCCGGCCCGCGATGGAGTTAGTCTGCTGAAAATATGGAATATGAACAAGTTGGGTGGGGTGTTGGGGGTTTATAACTGTCAAGGTGCTGCCTGGAGTGCTACTGAGAGGAAGAATGCGTTTCATAGTACGGACTATTCTGGTGGTGATGCCATCACTGGATATGTGAGGGCTTGTGATGTTCACCTCATTGCGGAGGCTGCTGATGACGCCCATGATTGGAACGGTGATTGTGCGCTCTACTCTCACCACTCCGGGCAGCTGATTGTTCTTCCTCACAATGTGGCGCTGCCGGTGTCCCTTAAGGTGTTGGAGCACGAGGTGTATGCTGTTGCGCCTATTAAGAAGGTTTTGGGTGGTGGCTACAGCTTTGCGCCTCTTGGACTTGTGAACATGTTCAATGCTGGTGCTGCTGTTGAAGGGCTGGTCTTCGAGGAGGATGGGTTGGTTCGTTTGGAGATCAAAGGGTGTGGTAAGTTTGGGGCTTATTCTTCTGCCAGACCAACAAAGTGTTTGCTGGGAAACCATGAGCTGCTGGATTTCGATTACGATGCTGATTCAGGCTTGCTCACCTTCAACATAGATCATTTGCCCCAAGAGGGACACTGGGTTCACTTAGTTGAGTTAGTTTACAGTCTTTCTTGTTAGTTAGTTGTTGCAATCAGAGAGGGAGAGGACATTGCTATGCTTTTGTGGTATTTCTTTCTTTTGCTGGGTAGGATAGAATAGACAAGGAGAGGGTTTTCAACAATTTCCACTTTGTAAGATTTCACGAGCTACCTGTTATGGAATTTCGATAGGAATTGAATACATGTTTCTTACTCTTCTTTCTTCTTAAAGTGTGCTAAACTCTTTTTGCTTAAAATTGGTTGATCCTCATGACTCCCACCACCAAAACATTCATAAATGTTGAATAAAAACATG

Coding sequences of Glyma17g11970

Limit To All Plant Sequences

>Glyma17g11970.5   sequence type=CDS   gene model=Glyma17g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGCCGGAGAACGTGGTGGAGACATCGACGGTGGAAGGAATGTTTCTCGGAGTGGATTTCGAGAAGGAAGACAGTAGGCAGGTGGTTTCGTTGGGAACGTTGAAGGACGTCCGGTTCATGGCGTGCTTCCGGTTCAAGCTGTGGTGGATGGCCCAGAAAATGGGAGATCGAGGAAGGGACATTCCGTTGGAGACTCAATTTCTGTTGGTGGAAACCAAAGATGGGTCCCACCTGGAGTCAGATAACGACAAAAACCAGAACCAGATCGTGTACACAGTCTTTCTACCTCTCGTGGAAGGCTCATTCAGAGCGTGCCTCCAGGGTGACTCCAACGACCAACTCCAGCTCTGCCTCGAGAGTGGCGACGTCGACATTAAAACGTCGTCGTTCACCCACGCTCTCTTCATCAGCGCCGGCACCGACCCATTCGCCACCATTCACCACGCATTCCGTTCAGTTCGGAACCACCTCAAGACTTTCCGCCTCCGCCACGAGAAGAAACTCCCTGGCATCGTGGATTGCTTCGGCTGGTGCACTTGGGATGCTTTCTACCAGGAAGTCACTCAGGAAGGAGTCGAGGCCGGAATTCAGTCCCTCGCAGGCGGCGGCACGCCGCCGAAGTTCGTCATCATCGACGACGGCTGGCAGTCGGTGGGCGGTGACGACAAGAACTCAAATTCGTTGCAGAGGCTAACTGGAATAAAAGAGAACGCGAAGTTCCAGAAGAAGGAGGAGCCAGAATTAGGGATTAAGAACATCGTGGAGATAGCGAAGAAGAAGCATTCAGTGAAAAACGTGTACGTATGGCACGCGATCACGGGTTACTGGGGAGGGGTTCGTCCAGGGGTGAAGGAAATGGAAGAGTACGGCTCCGTAATGAAGTACCCGAACGTGTCGAGTGGAGTAACAGAGAACGAGCCCACGTGGAAAGTGGACCCGTTAGCGGTTCAGGGGTTGGGCCTGGTGAACCCGAAGAAGGTGTTCACGTTTTACGACCAATTACACAGTTATCTGGCGTCCGCGGGTGTCGACGGCGTTAAGGTGGACGTGCAATGCATCTTAGAGACTCTGGGTGCAGGACTCGGTGGAAGGGTGGAACTCACGAGGAATTACCATCAGGCCCTTGACGCTTCGATTTCTAGAAACTTCCCTGACAATGGGTGCATCGCCTGCATGAGCCACAACACGGACGCGCTCTACTGCTCCAAACAGACGGCGGTGGTGAGGGCTTCCGATGATTTCTACCCGCGTGATCCGGTGTCGCACACTATCCACGTGGCGTCCGTGGCGTACAATAGCGTTTTCCTTGGGGAGATTATGTTGCCGGATTGGGATATGTTTCACTCCCTTCACCCTGCTGCGGAGTACCACGCTTCCGCTAGGGCCATCAGCGGTGGGCCCATCTACGTCAGCGACGCGCCGGGGAAGCATAACTTTGATCTGCTCAAGAAACTGGTCTTGCCCGATGGGTCGATTTTACGGGCCCGTCTACCAGGAAGGCCCACTAAGGATTGCTTGTTCACCGACCCGGCCCGCGATGGAGTTAGTCTGCTGAAAATATGGAATATGAACAAGTTGGGTGGGGTGTTGGGGGTTTATAACTGTCAAGGTGCTGCCTGGAGTGCTACTGAGAGGAAGAATGCGTTTCATAGTACGGACTATTCTGGTGGTGATGCCATCACTGGATATGTGAGGGCTTGTGATGTTCACCTCATTGCGGAGGCTGCTGATGACGCCCATGATTGGAACGGTGATTGTGCGCTCTACTCTCACCACTCCGGGCAGCTGATTGTTCTTCCTCACAATGTGGCGCTGCCGGTGTCCCTTAAGGTGTTGGAGCACGAGGTGTATGCTGTTGCGCCTATTAAGAAGGTTTTGGGTGGTGGCTACAGCTTTGCGCCTCTTGGACTTGTGAACATGTTCAATGCTGGTGCTGCTGTTGAAGGGCTGGTCTTCGAGGAGGATGGGTTGGTTCGTTTGGAGATCAAAGGGTGTGGTAAGTTTGGGGCTTATTCTTCTGCCAGACCAACAAAGTGTTTGCTGGGAAACCATGAGCTGCTGGATTTCGATTACGATGCTGATTCAGGCTTGCTCACCTTCAACATAGATCATTTGCCCCAAGAGGGACACTGGGTTCACTTAGTTGAGTTAGTTTACAGTCTTTCTTGTTAG

>Glyma17g11970.6   sequence type=CDS   gene model=Glyma17g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATAAAACCTGTTGTTCGTGTTTCGGAGGGGAAGCTGGTGGTGAAGGAGCGAACGATTTTGACCGGAATGCCGGAGAACGTGGTGGAGACATCGACGGTGGAAGGAATGTTTCTCGGAGTGGATTTCGAGAAGGAAGACAGTAGGCAGGTGGTTTCGTTGGGAACGTTGAAGGACGTCCGGTTCATGGCGTGCTTCCGGTTCAAGCTGTGGTGGATGGCCCAGAAAATGGGAGATCGAGGAAGGGACATTCCGTTGGAGACTCAATTTCTGTTGGTGGAAACCAAAGATGGGTCCCACCTGGAGTCAGATAACGACAAAAACCAGAACCAGATCGTGTACACAGTCTTTCTACCTCTCGTGGAAGGCTCATTCAGAGCGTGCCTCCAGGGTGACTCCAACGACCAACTCCAGCTCTGCCTCGAGAGTGGCGACGTCGACATTAAAACGTCGTCGTTCACCCACGCTCTCTTCATCAGCGCCGGCACCGACCCATTCGCCACCATTCACCACGCATTCCGTTCAGTTCGGAACCACCTCAAGACTTTCCGCCTCCGCCACGAGAAGAAACTCCCTGGCATCGTGGATTGCTTCGGCTGGTGCACTTGGGATGCTTTCTACCAGGAAGTCACTCAGGAAGGAGTCGAGGCCGGAATTCAGTCCCTCGCAGGCGGCGGCACGCCGCCGAAGTTCGTCATCATCGACGACGGCTGGCAGTCGGTGGGCGGTGACGACAAGAACTCAAATTCGTTGCAGAGGCTAACTGGAATAAAAGAGAACGCGAAGTTCCAGAAGAAGGAGGAGCCAGAATTAGGGATTAAGAACATCGTGGAGATAGCGAAGAAGAAGCATTCAGTGAAAAACGTGTACGTATGGCACGCGATCACGGGTTACTGGGGAGGGGTTCGTCCAGGGGTGAAGGAAATGGAAGAGTACGGCTCCGTAATGAAGTACCCGAACGTGTCGAGTGGAGTAACAGAGAACGAGCCCACGTGGAAAGTGGACCCGTTAGCGGTTCAGGGGTTGGGCCTGGTGAACCCGAAGAAGGTGTTCACGTTTTACGACCAATTACACAGTTATCTGGCGTCCGCGGGTGTCGACGGCGTTAAGGTGGACGTGCAATGCATCTTAGAGACTCTGGGTGCAGGACTCGGTGGAAGGGTGGAACTCACGAGGAATTACCATCAGGCCCTTGACGCTTCGATTTCTAGAAACTTCCCTGACAATGGGTGCATCGCCTGCATGAGCCACAACACGGACGCGCTCTACTGCTCCAAACAGACGGCGGTGGTGAGGGCTTCCGATGATTTCTACCCGCGTGATCCGGTGTCGCACACTATCCACGTGGCGTCCGTGGCGTACAATAGCGTTTTCCTTGGGGAGATTATGTTGCCGGATTGGGATATGTTTCACTCCCTTCACCCTGCTGCGGAGTACCACGCTTCCGCTAGGGCCATCAGCGGTGGGCCCATCTACGTCAGCGACGCGCCGGGGAAGCATAACTTTGATCTGCTCAAGAAACTGGTCTTGCCCGATGGGTCGATTTTACGGGCCCGTCTACCAGGAAGGCCCACTAAGGATTGCTTGTTCACCGACCCGGCCCGCGATGGAGTTAGTCTGCTGAAAATATGGAATATGAACAAGTTGGGTGGGGTGTTGGGGGTTTATAACTGTCAAGGTGCTGCCTGGAGTGCTACTGAGAGGAAGAATGCGTTTCATAGTACGGACTATTCTGGTGGTGATGCCATCACTGGATATGTGAGGGCTTGTGATGTTCACCTCATTGCGGAGGCTGCTGATGACGCCCATGATTGGAACGGTGATTGTGCGCTCTACTCTCACCACTCCGGGCAGCTGATTGTTCTTCCTCACAATGTGGCGCTGCCGGTGTCCCTTAAGGTGTTGGAGCACGAGGTGTATGCTGTTGCGCCTATTAAGAAGGTTTTGGGTGGTGGCTACAGCTTTGCGCCTCTTGGACTTGTGAACATGTTCAATGCTGGTGCTGCTGTTGAAGGGCTGGTCTTCGAGGAGGATGGGTTGGTTCGTTTGGAGATCAAAGGGTGTGGTAAGTTTGGGGCTTATTCTTCTGCCAGACCAACAAAGTGTTTGCTGGGAAACCATGAGCTGCTGGATTTCGATTACGATGCTGATTCAGGCTTGCTCACCTTCAACATAGATCATTTGCCCCAAGAGGGACACTGGGTTCACTTAGTTGAGTTAGTTTACAGTCTTTCTTGTTAG

Predicted protein sequences of Glyma17g11970

Limit To All Plant Sequences

>Glyma17g11970.5   sequence type=predicted peptide   gene model=Glyma17g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIKPVVRVSEGKLVVKERTILTGMPENVVETSTVEGMFLGVDFEKEDSRQVVSLGTLKDVRFMACFRFKLWWMAQKMGDRGRDIPLETQFLLVETKDGSHLESDNDKNQNQIVYTVFLPLVEGSFRACLQGDSNDQLQLCLESGDVDIKTSSFTHALFISAGTDPFATIHHAFRSVRNHLKTFRLRHEKKLPGIVDCFGWCTWDAFYQEVTQEGVEAGIQSLAGGGTPPKFVIIDDGWQSVGGDDKNSNSLQRLTGIKENAKFQKKEEPELGIKNIVEIAKKKHSVKNVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSSGVTENEPTWKVDPLAVQGLGLVNPKKVFTFYDQLHSYLASAGVDGVKVDVQCILETLGAGLGGRVELTRNYHQALDASISRNFPDNGCIACMSHNTDALYCSKQTAVVRASDDFYPRDPVSHTIHVASVAYNSVFLGEIMLPDWDMFHSLHPAAEYHASARAISGGPIYVSDAPGKHNFDLLKKLVLPDGSILRARLPGRPTKDCLFTDPARDGVSLLKIWNMNKLGGVLGVYNCQGAAWSATERKNAFHSTDYSGGDAITGYVRACDVHLIAEAADDAHDWNGDCALYSHHSGQLIVLPHNVALPVSLKVLEHEVYAVAPIKKVLGGGYSFAPLGLVNMFNAGAAVEGLVFEEDGLVRLEIKGCGKFGAYSSARPTKCLLGNHELLDFDYDADSGLLTFNIDHLPQEGHWVHLVELVYSLSC*

>Glyma17g11970.6   sequence type=predicted peptide   gene model=Glyma17g11970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIKPVVRVSEGKLVVKERTILTGMPENVVETSTVEGMFLGVDFEKEDSRQVVSLGTLKDVRFMACFRFKLWWMAQKMGDRGRDIPLETQFLLVETKDGSHLESDNDKNQNQIVYTVFLPLVEGSFRACLQGDSNDQLQLCLESGDVDIKTSSFTHALFISAGTDPFATIHHAFRSVRNHLKTFRLRHEKKLPGIVDCFGWCTWDAFYQEVTQEGVEAGIQSLAGGGTPPKFVIIDDGWQSVGGDDKNSNSLQRLTGIKENAKFQKKEEPELGIKNIVEIAKKKHSVKNVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSSGVTENEPTWKVDPLAVQGLGLVNPKKVFTFYDQLHSYLASAGVDGVKVDVQCILETLGAGLGGRVELTRNYHQALDASISRNFPDNGCIACMSHNTDALYCSKQTAVVRASDDFYPRDPVSHTIHVASVAYNSVFLGEIMLPDWDMFHSLHPAAEYHASARAISGGPIYVSDAPGKHNFDLLKKLVLPDGSILRARLPGRPTKDCLFTDPARDGVSLLKIWNMNKLGGVLGVYNCQGAAWSATERKNAFHSTDYSGGDAITGYVRACDVHLIAEAADDAHDWNGDCALYSHHSGQLIVLPHNVALPVSLKVLEHEVYAVAPIKKVLGGGYSFAPLGLVNMFNAGAAVEGLVFEEDGLVRLEIKGCGKFGAYSSARPTKCLLGNHELLDFDYDADSGLLTFNIDHLPQEGHWVHLVELVYSLSC*

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