Report for Sequence Feature Glyma17g11961
Feature Type: gene_model
Chromosome: Gm17
Start: 9006506
stop: 9013109
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g11961
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
PF12231 PFAM
Rap1-interacting factor 1 N terminal
JGI ISS
UniRef100_G7JFC5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Telomere-associated protein RIF1 n=1 Tax=Medicago truncatula RepID=G7JFC5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_G7JFC5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Telomere-associated protein RIF1 n=1 Tax=Medicago truncatula RepID=G7JFC5_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g11961
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g11961
Paralog Evidence Comments
Glyma13g22906 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g11961 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g111300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g11961
Coding sequences of Glyma17g11961
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g11961.1 sequence type=CDS gene model=Glyma17g11961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGAAGAGATCCAAGAAATCCATAGTTTAATTTATTCAGATGACAAGTTCAACAAATCCTCGGGCTATTCAGCACTCTTTCAATTTCAGCAACATTCTTGCGCCAACCCTTTTTCGCTTCAATCCCTCGCTCACTCCTCTCAATCCATAATCTCTTCCATCGTCTCCGACATTTCCAACGACCACGATGAAGAAATATCCACACAAGCCTTGAAGTGTTTGGGCTTCATGCTTTATCATCCCTCCGTCGTGTCCATCCTTCGAGTGGATGATGCCAATTTGGTGTTGGGCGCATTGCCCAAACTTATTACTACTACAAAATTAAAGTCTGCTTGTAATTTAGGGGTATGGTGCTTGTCTGTCCAACAGTTAGGTGCATCGTTTCTTGATACTCACTTTCCTTCTTTGTTACGGGCAATTGTTCATGCCCTAGACAATCCTATGGGTTCTTTGTCCACAACATTTGAAGCTACCCAGGCTGTAATGAAGCTTTCTGGTCAACTAAGTGAGCAAATGAAAGGATCATCCCATATATGGGCTCCTCCAATATACAGGAGACTTATCAGCACAGATAAGAGGGGGAGGGATGCCTCAGAAAGGTGCCTGTTGAAGATCAGATCCACAGTCATTCCTCCTTCTCTGGATCTCTCTAAGGTTATTGTCAAAGATATGAAGATAAAATTGCTCAATGGGATGAAGGATTTGCTAGATAATGGTATGAAGATTCAAGCTATTCATGCATGGGGATGGTTTGTCCGAATGCTTGGATCCTATGCTTCAAGGAATAGACATTTAGTTAATGATATGCTGAAAATTCCTGAACGTACATTTACAGATCTTGACCCTCAAATTCAAATTGCTACACAGGTTGCTTGGGAAGGTCTTATTGATGCTCTTGTTCACTGTCCAACATTTGTTTCTGAGAAAAGTAAATCAGCTGAGGAGAATTCTCTCGAGAAACAGCATTCATTAGGAAGGAAAAAATGTGATGATCAAGCAAATGGGTTTTTAAAAAGCATAAAGCTAATAATGACTCCACTGATTGGCATCATGTCCAGTAAATGTGATATATCTGTTCATTCATCCTGCTTGAACACGTGGTGTTATTTGCTACATAAGCTTGATATCTCTATCAATGAACCATCAGTGATAAAAATGGTTTTAGAGCCTATACTTAAAGCAATATTTCAGAATGGACCTAATAGCAATAGCATCTGCTTATGGAACTTGGGCCTTGATCTGCTTAGTGATAGCATTTCACAGAAGTGTATGGATGTCTTCTACCAGTCAACTGGCCCGGTAAGCCACAAAATATCTGAAAATGGACCTTCTCTATCTGGAAAATGTTCCTGGAAGCAACACCTAATTAGATGGATGCCATGGAATATCAATCAATTGGACTTTTATCTGAATATGATTTTTCATCTCATCCATCAAGCATCTAGGCCAACTGTCACTTGTGATCATAGAAGTCATGTTTATAATACTACCTTGAAGTTATTCATATATATTCTGAAGGGAGTCAAACTGGATGTGGAAAGTCCATCTACCGATTATGATGGTATTATGCAGTGTTTGAACTCATTACTAAAGTTCATCAAGAAAGTATGTGAAGATTTATGCTCAGATGTCGATGAAAATTATGATGTTTATTGTACTTCCATTCAGTTTATAGATGCTACCACAAAGGAGTTAGGTCCTTCTATCTTGGGATCTCCTCTGTACAAGTTTTCTTTAGATTTAAAGTACATTGAGGACATGCAATCAGTTGATCATAAGAAACATCTAAAATTTCTGGGTGTTGGTTGTATTTCTTATATGGATAAGGTTTCTCCATTGATTTATTTGATAGCACTGTACTTCCATATGATGGTTCAGTTAACAAAGAAATCCCATCAATCAGACCACATTTCACAAGGGATGTGTGAATATTTTAAATTTATATTTTGTTCAAGTGATCTCCTGGAAAATCTCCTCACCAGTATTGACTTGTTGTACAGACACGTTCGACCAATTTACTTAAGCATATGGATATCATTAGCTCAAAGTCTGAACTATTGTGTATCTGATGCAAACTGCAAGTCACTACAGGAAGCCTTGTCCGACAGCACTGTATATTCTTCCATATGCCATCTTTTAATTTACCCCATCGTGGCACATTCTGAAGTTCCAAGAATGACCTTGTCAAACAATAGTGCCTCTTTGGATAAATATCCTGTATCACAAGAAAGAAAGAGGGGTTTTGAACTGGTTATTCAAACCTGGAAATCACTTTATGGATCTCTTAGTGCTTTAGGCTTTGGATGCTCATCAGCCACCAATTTCTCTGGGGATCTGTGCATGTTGTTAAGCAACTGCCTTGATGAAAATGGTGGCATGGTTGAGAGTGGCACTGATTTGGAGTCAGCATGCAAGGATGTGGATCATGGCATCCTTCATTTATCTGGCAATTTCTTGATATGCATTCTAGAGCAGATTCAGACTTTGGAATTAGTTTCTGAGTTGGACAGAAGTAAATTTGACTGTGATAGCAAAATATTGTGCTGCATAAAGAACTGCTTAAAATTTGTTGCCAAGTATATGAATTTATTGAGGATAAAGATGGTTAGAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGCTGTATTCTGCACTGGCATGCTCTATTAGTTGCCTTCACTGGAAGCAAGATATTCTTCATTTTCTCGAGAATGTTTCCTGCCCACTGCTTCAATGGCTATCAAATATGGGAATGCAGGATGAAAGAACAAACGACCAACTTCAACTTCTGTGGACAGAAATTCTTAGCTGCTTAAGAAGAAGTAAACCACCAGTCAACTTCGGTTCTGCTTTACTCAAACTTCATGAACCTCTGTTTGAAAAAACTCTTGATCACCCATACCCCTCCATTTCAGAACCAACCATCAACTTTTGGAATTCTACGTTTGGTCAGCAAATTATTTTGGATTTCCCCTCGAGTCTGCTTTGTGTTTTGGACAAGTTATCCAGAAATGGAAGGTTAAAACTCCAGAAGAGAAGCCTACCATGTCTTCAAAAATGTTATTCTCATGACGAAGCCAATGATGCTCTAGAGGGATATAGGGTCTCTGCAAAACATAACAGGAGCTCTAAGAGGGTGGAACTAGTGTTGGATACACTAAAAGAATCACCTCCTTTAAGTTTTAAAAAGAGGAGGTTAGAACTAACTGAGCATCAAAAGGAAGTCAGGCGAGCACAGCAAGGAAGGGAAAGGGATACTGGAGGACATGGCCCAGGAATTAGAACATACACTACTGCAGATTTTACACAAGGGAATGATGAATCACAAGAAAGCCAGGAGGAGATAAGAGATCCTGAAGCTATATTGCAGATGTTGAGAAAAACTATCTGA
Predicted protein sequences of Glyma17g11961
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g11961.1 sequence type=predicted peptide gene model=Glyma17g11961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEEIQEIHSLIYSDDKFNKSSGYSALFQFQQHSCANPFSLQSLAHSSQSIISSIVSDISNDHDEEISTQALKCLGFMLYHPSVVSILRVDDANLVLGALPKLITTTKLKSACNLGVWCLSVQQLGASFLDTHFPSLLRAIVHALDNPMGSLSTTFEATQAVMKLSGQLSEQMKGSSHIWAPPIYRRLISTDKRGRDASERCLLKIRSTVIPPSLDLSKVIVKDMKIKLLNGMKDLLDNGMKIQAIHAWGWFVRMLGSYASRNRHLVNDMLKIPERTFTDLDPQIQIATQVAWEGLIDALVHCPTFVSEKSKSAEENSLEKQHSLGRKKCDDQANGFLKSIKLIMTPLIGIMSSKCDISVHSSCLNTWCYLLHKLDISINEPSVIKMVLEPILKAIFQNGPNSNSICLWNLGLDLLSDSISQKCMDVFYQSTGPVSHKISENGPSLSGKCSWKQHLIRWMPWNINQLDFYLNMIFHLIHQASRPTVTCDHRSHVYNTTLKLFIYILKGVKLDVESPSTDYDGIMQCLNSLLKFIKKVCEDLCSDVDENYDVYCTSIQFIDATTKELGPSILGSPLYKFSLDLKYIEDMQSVDHKKHLKFLGVGCISYMDKVSPLIYLIALYFHMMVQLTKKSHQSDHISQGMCEYFKFIFCSSDLLENLLTSIDLLYRHVRPIYLSIWISLAQSLNYCVSDANCKSLQEALSDSTVYSSICHLLIYPIVAHSEVPRMTLSNNSASLDKYPVSQERKRGFELVIQTWKSLYGSLSALGFGCSSATNFSGDLCMLLSNCLDENGGMVESGTDLESACKDVDHGILHLSGNFLICILEQIQTLELVSELDRSKFDCDSKILCCIKNCLKFVAKYMNLLRIKMVRDPLPGFVGTSRLYSALACSISCLHWKQDILHFLENVSCPLLQWLSNMGMQDERTNDQLQLLWTEILSCLRRSKPPVNFGSALLKLHEPLFEKTLDHPYPSISEPTINFWNSTFGQQIILDFPSSLLCVLDKLSRNGRLKLQKRSLPCLQKCYSHDEANDALEGYRVSAKHNRSSKRVELVLDTLKESPPLSFKKRRLELTEHQKEVRRAQQGRERDTGGHGPGIRTYTTADFTQGNDESQESQEEIRDPEAILQMLRKTI*