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Report for Sequence Feature Glyma17g11961

Feature Type:gene_model
Chromosome:Gm17
Start:9006506
stop:9013109
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
PF12231PFAM Rap1-interacting factor 1 N terminal JGI ISS
UniRef100_G7JFC5UniRef Annotation by Michelle Graham. Best UniRef hit: Telomere-associated protein RIF1 n=1 Tax=Medicago truncatula RepID=G7JFC5_MEDTR SoyBaseE_val: 0ISS
UniRef100_G7JFC5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Telomere-associated protein RIF1 n=1 Tax=Medicago truncatula RepID=G7JFC5_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11961 not represented in the dataset

Glyma17g11961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g22906 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g111300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g11961.1   sequence type=CDS   gene model=Glyma17g11961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGAAGAGATCCAAGAAATCCATAGTTTAATTTATTCAGATGACAAGTTCAACAAATCCTCGGGCTATTCAGCACTCTTTCAATTTCAGCAACATTCTTGCGCCAACCCTTTTTCGCTTCAATCCCTCGCTCACTCCTCTCAATCCATAATCTCTTCCATCGTCTCCGACATTTCCAACGACCACGATGAAGAAATATCCACACAAGCCTTGAAGTGTTTGGGCTTCATGCTTTATCATCCCTCCGTCGTGTCCATCCTTCGAGTGGATGATGCCAATTTGGTGTTGGGCGCATTGCCCAAACTTATTACTACTACAAAATTAAAGTCTGCTTGTAATTTAGGGGTATGGTGCTTGTCTGTCCAACAGTTAGGTGCATCGTTTCTTGATACTCACTTTCCTTCTTTGTTACGGGCAATTGTTCATGCCCTAGACAATCCTATGGGTTCTTTGTCCACAACATTTGAAGCTACCCAGGCTGTAATGAAGCTTTCTGGTCAACTAAGTGAGCAAATGAAAGGATCATCCCATATATGGGCTCCTCCAATATACAGGAGACTTATCAGCACAGATAAGAGGGGGAGGGATGCCTCAGAAAGGTGCCTGTTGAAGATCAGATCCACAGTCATTCCTCCTTCTCTGGATCTCTCTAAGGTTATTGTCAAAGATATGAAGATAAAATTGCTCAATGGGATGAAGGATTTGCTAGATAATGGTATGAAGATTCAAGCTATTCATGCATGGGGATGGTTTGTCCGAATGCTTGGATCCTATGCTTCAAGGAATAGACATTTAGTTAATGATATGCTGAAAATTCCTGAACGTACATTTACAGATCTTGACCCTCAAATTCAAATTGCTACACAGGTTGCTTGGGAAGGTCTTATTGATGCTCTTGTTCACTGTCCAACATTTGTTTCTGAGAAAAGTAAATCAGCTGAGGAGAATTCTCTCGAGAAACAGCATTCATTAGGAAGGAAAAAATGTGATGATCAAGCAAATGGGTTTTTAAAAAGCATAAAGCTAATAATGACTCCACTGATTGGCATCATGTCCAGTAAATGTGATATATCTGTTCATTCATCCTGCTTGAACACGTGGTGTTATTTGCTACATAAGCTTGATATCTCTATCAATGAACCATCAGTGATAAAAATGGTTTTAGAGCCTATACTTAAAGCAATATTTCAGAATGGACCTAATAGCAATAGCATCTGCTTATGGAACTTGGGCCTTGATCTGCTTAGTGATAGCATTTCACAGAAGTGTATGGATGTCTTCTACCAGTCAACTGGCCCGGTAAGCCACAAAATATCTGAAAATGGACCTTCTCTATCTGGAAAATGTTCCTGGAAGCAACACCTAATTAGATGGATGCCATGGAATATCAATCAATTGGACTTTTATCTGAATATGATTTTTCATCTCATCCATCAAGCATCTAGGCCAACTGTCACTTGTGATCATAGAAGTCATGTTTATAATACTACCTTGAAGTTATTCATATATATTCTGAAGGGAGTCAAACTGGATGTGGAAAGTCCATCTACCGATTATGATGGTATTATGCAGTGTTTGAACTCATTACTAAAGTTCATCAAGAAAGTATGTGAAGATTTATGCTCAGATGTCGATGAAAATTATGATGTTTATTGTACTTCCATTCAGTTTATAGATGCTACCACAAAGGAGTTAGGTCCTTCTATCTTGGGATCTCCTCTGTACAAGTTTTCTTTAGATTTAAAGTACATTGAGGACATGCAATCAGTTGATCATAAGAAACATCTAAAATTTCTGGGTGTTGGTTGTATTTCTTATATGGATAAGGTTTCTCCATTGATTTATTTGATAGCACTGTACTTCCATATGATGGTTCAGTTAACAAAGAAATCCCATCAATCAGACCACATTTCACAAGGGATGTGTGAATATTTTAAATTTATATTTTGTTCAAGTGATCTCCTGGAAAATCTCCTCACCAGTATTGACTTGTTGTACAGACACGTTCGACCAATTTACTTAAGCATATGGATATCATTAGCTCAAAGTCTGAACTATTGTGTATCTGATGCAAACTGCAAGTCACTACAGGAAGCCTTGTCCGACAGCACTGTATATTCTTCCATATGCCATCTTTTAATTTACCCCATCGTGGCACATTCTGAAGTTCCAAGAATGACCTTGTCAAACAATAGTGCCTCTTTGGATAAATATCCTGTATCACAAGAAAGAAAGAGGGGTTTTGAACTGGTTATTCAAACCTGGAAATCACTTTATGGATCTCTTAGTGCTTTAGGCTTTGGATGCTCATCAGCCACCAATTTCTCTGGGGATCTGTGCATGTTGTTAAGCAACTGCCTTGATGAAAATGGTGGCATGGTTGAGAGTGGCACTGATTTGGAGTCAGCATGCAAGGATGTGGATCATGGCATCCTTCATTTATCTGGCAATTTCTTGATATGCATTCTAGAGCAGATTCAGACTTTGGAATTAGTTTCTGAGTTGGACAGAAGTAAATTTGACTGTGATAGCAAAATATTGTGCTGCATAAAGAACTGCTTAAAATTTGTTGCCAAGTATATGAATTTATTGAGGATAAAGATGGTTAGAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGCTGTATTCTGCACTGGCATGCTCTATTAGTTGCCTTCACTGGAAGCAAGATATTCTTCATTTTCTCGAGAATGTTTCCTGCCCACTGCTTCAATGGCTATCAAATATGGGAATGCAGGATGAAAGAACAAACGACCAACTTCAACTTCTGTGGACAGAAATTCTTAGCTGCTTAAGAAGAAGTAAACCACCAGTCAACTTCGGTTCTGCTTTACTCAAACTTCATGAACCTCTGTTTGAAAAAACTCTTGATCACCCATACCCCTCCATTTCAGAACCAACCATCAACTTTTGGAATTCTACGTTTGGTCAGCAAATTATTTTGGATTTCCCCTCGAGTCTGCTTTGTGTTTTGGACAAGTTATCCAGAAATGGAAGGTTAAAACTCCAGAAGAGAAGCCTACCATGTCTTCAAAAATGTTATTCTCATGACGAAGCCAATGATGCTCTAGAGGGATATAGGGTCTCTGCAAAACATAACAGGAGCTCTAAGAGGGTGGAACTAGTGTTGGATACACTAAAAGAATCACCTCCTTTAAGTTTTAAAAAGAGGAGGTTAGAACTAACTGAGCATCAAAAGGAAGTCAGGCGAGCACAGCAAGGAAGGGAAAGGGATACTGGAGGACATGGCCCAGGAATTAGAACATACACTACTGCAGATTTTACACAAGGGAATGATGAATCACAAGAAAGCCAGGAGGAGATAAGAGATCCTGAAGCTATATTGCAGATGTTGAGAAAAACTATCTGA

>Glyma17g11961.1   sequence type=predicted peptide   gene model=Glyma17g11961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEEIQEIHSLIYSDDKFNKSSGYSALFQFQQHSCANPFSLQSLAHSSQSIISSIVSDISNDHDEEISTQALKCLGFMLYHPSVVSILRVDDANLVLGALPKLITTTKLKSACNLGVWCLSVQQLGASFLDTHFPSLLRAIVHALDNPMGSLSTTFEATQAVMKLSGQLSEQMKGSSHIWAPPIYRRLISTDKRGRDASERCLLKIRSTVIPPSLDLSKVIVKDMKIKLLNGMKDLLDNGMKIQAIHAWGWFVRMLGSYASRNRHLVNDMLKIPERTFTDLDPQIQIATQVAWEGLIDALVHCPTFVSEKSKSAEENSLEKQHSLGRKKCDDQANGFLKSIKLIMTPLIGIMSSKCDISVHSSCLNTWCYLLHKLDISINEPSVIKMVLEPILKAIFQNGPNSNSICLWNLGLDLLSDSISQKCMDVFYQSTGPVSHKISENGPSLSGKCSWKQHLIRWMPWNINQLDFYLNMIFHLIHQASRPTVTCDHRSHVYNTTLKLFIYILKGVKLDVESPSTDYDGIMQCLNSLLKFIKKVCEDLCSDVDENYDVYCTSIQFIDATTKELGPSILGSPLYKFSLDLKYIEDMQSVDHKKHLKFLGVGCISYMDKVSPLIYLIALYFHMMVQLTKKSHQSDHISQGMCEYFKFIFCSSDLLENLLTSIDLLYRHVRPIYLSIWISLAQSLNYCVSDANCKSLQEALSDSTVYSSICHLLIYPIVAHSEVPRMTLSNNSASLDKYPVSQERKRGFELVIQTWKSLYGSLSALGFGCSSATNFSGDLCMLLSNCLDENGGMVESGTDLESACKDVDHGILHLSGNFLICILEQIQTLELVSELDRSKFDCDSKILCCIKNCLKFVAKYMNLLRIKMVRDPLPGFVGTSRLYSALACSISCLHWKQDILHFLENVSCPLLQWLSNMGMQDERTNDQLQLLWTEILSCLRRSKPPVNFGSALLKLHEPLFEKTLDHPYPSISEPTINFWNSTFGQQIILDFPSSLLCVLDKLSRNGRLKLQKRSLPCLQKCYSHDEANDALEGYRVSAKHNRSSKRVELVLDTLKESPPLSFKKRRLELTEHQKEVRRAQQGRERDTGGHGPGIRTYTTADFTQGNDESQESQEEIRDPEAILQMLRKTI*







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