Glyma17g11910 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g11910

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8953508
stop:	8958483
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35200	AT	Annotation by Michelle Graham. TAIR10: ENTH/ANTH/VHS superfamily protein \| chr5:13462463-13465581 REVERSE LENGTH=544	SoyBase	E_val: 0	ISS
GO:0048268	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin coat assembly	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0030118	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0005545	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG0251	KOG	Clathrin assembly protein AP180 and related proteins, contain ENTH domain	JGI		ISS
PTHR22951	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PTHR22951:SF1	Panther	CLATHRIN ASSEMBLY PROTEIN	JGI		ISS
PF07651	PFAM	ANTH domain	JGI		ISS
UniRef100_B9T128	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clathrin assembly protein, putative n=1 Tax=Ricinus communis RepID=B9T128_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MU50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11910

Paralog	Evidence	Comments
Glyma13g22970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g110800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11910

Limit To All Plant Sequences

>Glyma17g11910.4   sequence type=transcript   gene model=Glyma17g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAAAATATGCTACAACTAATTCTTAATTTTTTGTTGGACTCGTTGTTTTTCTTTGTTCCAATACCAATAATAATAATAAATAAAATTAAAAAATATCAGAGACGACGACGACCACCAACCAAACCAAGCCTATATTGTCTGTCGACTTTTCTTTCTCTCTCTGGTCTCAGGCAAACAACAACACTCTTTCTCTCTCTTCAATTCAGCTTCTTCAGCTTCAGCGAAATCCTGTTCTAACCGTAGATCGTGCCTTTTCTTTTGTGCCTGAGAAGCCACTTCTCTACTTGCGGTTCTTCTTCTTCTTCTTCTTCTTCAATTTTATTCGATTCGCTTGCTGGAAAATTCTTTGAGTGAGGGAGAGGATGTCTGGTGGCACACAGAAGAGTCTGAGAAAAGCACTTGGAGCCCTTAAGGACACCACAACAGTCTCGTTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTGCTATAGTTAGAGCCACAAATCATGTTGAACGTCCGGCTAAGGAAAAACATATAAGAGCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGTATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCGGTTGCTTTGAAAACTTTAATTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATAAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCGTGGGTCCGCACTTATGCCTTATTTTTGGAGGAGAGGCTGGAATGTTTCCGTGTGTTGAAGTATGACATTGAGGCAGACCGTCCTAGGACCAAAGATTTGGATACTGCAGAACTGTTAGAGCAGTTGCCAGCTTTACAGCAACTTCTCAATCGGGTTATTGGTTGCCAGCCACACAGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGAACAGTCAATATGGTTGATAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCACCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGACATTGGACGGGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTTCCTCATTTCTGCAAGCCATGGAAGAGTATGTCAAAGATGCTCCCCAGGGACCAATAGTTCACAAGGATCTGGCTATTGAGAACAAAGAAGTTTTGGCTATTGAATACAAAAAGACAACAGAAGTGGAAGAGGAACGTCCACCCTCAGCCTCAGCCTCACCCTCTCCACCTCCACCTTCTGAACCTGTGAAAGTGGACGCACCACCAGTACAACCACCACCTGATTTGTTGAATTTGGAGGATCCTGTTCCTGCTGCTGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCACTGCAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACACTAGACAGCCTATACGATGATGCACTCAGAAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGCCAGCACCAGGGGGAAACATGATGCAACCGACAATGCACGATCCGTTTTTTGCCTCTAATACAGTTGCCGCTCCACCTTCTGTTCAGATGGCTGCCATGTCCAACCAACAGCAAACTTTCATGTTTCAACATCAACAACAACAACAAATGATGATGCCCCCCCAACAACAATCTGTAAATCCTTTTGGAAATCCTTATGGAGCCGCCGCTGTCCATCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAGGCATTTCCTGTGGAAAACAAATCCTTAATAAGCTCAAGGTAAAAAAGAAATGGATACTCTGATTACTCTAAGCTTTCGATTCCGAGATTGGGAAACATTAAGAAAGAATAGACTTGTATCATACGTTGGGTGTGTGCCATAGTTAGCTAGAGTGAAATTCTTTTTGAATAATTAGCACAGAGGGAGGGTTTTGATTATATGATTTTTTATGTACAAGGTAAATTGATAATGAGCTCTGATTCAAACCACTTAGTTTCATTTGCCCCTAGTTGAGACTACTTCAACGCTTTAGCAGAAAATTTGTTCTTGATATATTGGACTATATTGTTCTCAGTTGCTATTTCCTGTATATGGTGGGAACTATATTCATTATGTGATTGTTATACAATTTGTTCAATGAAAACACGTCAAGTCTAATAAATGAGTCATTTTGGTTTGAGGAACACTTTTTTTCTTCATTCCCATGTGTAATGTGTTACTTCTGTAAGACGTTTGTGCAAGTATTTAATTTATTATACTCATTTTTCTCTTCTCGATGGGTGA

Coding sequences of Glyma17g11910

Limit To All Plant Sequences

>Glyma17g11910.3   sequence type=CDS   gene model=Glyma17g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTGGCACACAGAAGAGTCTGAGAAAAGCACTTGGAGCCCTTAAGGACACCACAACAGTCTCGTTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTGCTATAGTTAGAGCCACAAATCATGTTGAACGTCCGGCTAAGGAAAAACATATAAGAGCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGTATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCGGTTGCTTTGAAAACTTTAATTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATAAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCGTGGGTCCGCACTTATGCCTTATTTTTGGAGGAGAGGCTGGAATGTTTCCGTGTGTTGAAGTATGACATTGAGGCAGACCGTCCTAGGACCAAAGATTTGGATACTGCAGAACTGTTAGAGCAGTTGCCAGCTTTACAGCAACTTCTCAATCGGGTTATTGGTTGCCAGCCACACAGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGAACAGTCAATATGGTTGATAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCACCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGACATTGGACGGGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTTCCTCATTTCTGCAAGCCATGGAAGAGTATGTCAAAGATGCTCCCCAGGGACCAATAGTTCACAAGGATCTGGCTATTGAGAACAAAGAAGTTTTGGCTATTGAATACAAAAAGACAACAGAAGTGGAAGAGGAACGTCCACCCTCAGCCTCAGCCTCACCCTCTCCACCTCCACCTTCTGAACCTGTGAAAGTGGACGCACCACCAGTACAACCACCACCTGATTTGTTGAATTTGGAGGATCCTGTTCCTGCTGCTGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCACTGCAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACACTAGACAGCCTATACGATGATGCACTCAGAAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGCCAGCACCAGGGGGAAACATGATGCAACCGACAATGCACGATCCGTTTTTTGCCTCTAATACAGTTGCCGCTCCACCTTCTGTTCAGATGGCTGCCATGTCCAACCAACAGCAAACTTTCATGTTTCAACATCAACAACAACAACAAATGATGATGCCCCCCCAACAACAATCTGTAAATCCTTTTGGAAATCCTTATGGAGCCGCCGCTGTCCATCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG

>Glyma17g11910.4   sequence type=CDS   gene model=Glyma17g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTGGCACACAGAAGAGTCTGAGAAAAGCACTTGGAGCCCTTAAGGACACCACAACAGTCTCGTTGGCTAAGGTCAACAGTGATTACAAGGAATTGGACATTGCTATAGTTAGAGCCACAAATCATGTTGAACGTCCGGCTAAGGAAAAACATATAAGAGCTATATTTTCAGCTATCTCAGCTACAAGACCCAGGGCTGATGTTGCCTATTGTATCCACGCACTTGCCAGGCGGTTATCAAAGACACATAACTGGGCGGTTGCTTTGAAAACTTTAATTGTTATTCACCGTGCTCTAAGGGAAGTGGATCCTACATTTCATGAAGAACTCATAAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGATTCCAGTCCAAATGCATGGGATTATTCTGCGTGGGTCCGCACTTATGCCTTATTTTTGGAGGAGAGGCTGGAATGTTTCCGTGTGTTGAAGTATGACATTGAGGCAGACCGTCCTAGGACCAAAGATTTGGATACTGCAGAACTGTTAGAGCAGTTGCCAGCTTTACAGCAACTTCTCAATCGGGTTATTGGTTGCCAGCCACACAGGGCAGCTGTAAATAACTTTGTCATTCAGTTAGCACTCTCAATGGTTGCTTCAGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGAACAGTCAATATGGTTGATAAGTTTTTTGAGATGCAACGCCATGATGCTCTGAAAGCTCTTGATATATACAGGAGGGTTGGGCACCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGACATTGGACGGGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTTCCTCATTTCTGCAAGCCATGGAAGAGTATGTCAAAGATGCTCCCCAGGGACCAATAGTTCACAAGGATCTGGCTATTGAGAACAAAGAAGTTTTGGCTATTGAATACAAAAAGACAACAGAAGTGGAAGAGGAACGTCCACCCTCAGCCTCAGCCTCACCCTCTCCACCTCCACCTTCTGAACCTGTGAAAGTGGACGCACCACCAGTACAACCACCACCTGATTTGTTGAATTTGGAGGATCCTGTTCCTGCTGCTGCAGAGTTGGAAGAGAAGAATGCATTGGCTTTAGCCATTGTCCCCGTTGCTGTTGAGCAACAACCTTCTGCTGCTTCAAATCAAGCAAATGGAACTACAGGATGGGAATTGGCACTTGTTACTGCTCCTAGTTCAAACGAGACTGCCACTGCAGCTAGCAAACTGGCTGGAGGTTTGGACAAGCTTACACTAGACAGCCTATACGATGATGCACTCAGAAGAAACAACCAAAATGTCAGCTATAATCCATGGGAGCCAGCACCAGGGGGAAACATGATGCAACCGACAATGCACGATCCGTTTTTTGCCTCTAATACAGTTGCCGCTCCACCTTCTGTTCAGATGGCTGCCATGTCCAACCAACAGCAAACTTTCATGTTTCAACATCAACAACAACAACAAATGATGATGCCCCCCCAACAACAATCTGTAAATCCTTTTGGAAATCCTTATGGAGCCGCCGCTGTCCATCCCTATGGCTCAGGTATGCCTGTTCAATCATACAATCCATATACAGGTCTCATCTAG

Predicted protein sequences of Glyma17g11910

Limit To All Plant Sequences

>Glyma17g11910.3   sequence type=predicted peptide   gene model=Glyma17g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHRAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGHQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVHKDLAIENKEVLAIEYKKTTEVEEERPPSASASPSPPPPSEPVKVDAPPVQPPPDLLNLEDPVPAAAELEEKNALALAIVPVAVEQQPSAASNQANGTTGWELALVTAPSSNETATAASKLAGGLDKLTLDSLYDDALRRNNQNVSYNPWEPAPGGNMMQPTMHDPFFASNTVAAPPSVQMAAMSNQQQTFMFQHQQQQQMMMPPQQQSVNPFGNPYGAAAVHPYGSGMPVQSYNPYTGLI*

>Glyma17g11910.4   sequence type=predicted peptide   gene model=Glyma17g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDIAIVRATNHVERPAKEKHIRAIFSAISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLNRVIGCQPHRAAVNNFVIQLALSMVASESIKIYQAISDGTVNMVDKFFEMQRHDALKALDIYRRVGHQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGPIVHKDLAIENKEVLAIEYKKTTEVEEERPPSASASPSPPPPSEPVKVDAPPVQPPPDLLNLEDPVPAAAELEEKNALALAIVPVAVEQQPSAASNQANGTTGWELALVTAPSSNETATAASKLAGGLDKLTLDSLYDDALRRNNQNVSYNPWEPAPGGNMMQPTMHDPFFASNTVAAPPSVQMAAMSNQQQTFMFQHQQQQQMMMPPQQQSVNPFGNPYGAAAVHPYGSGMPVQSYNPYTGLI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain