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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G11000 | AT | Annotation by Michelle Graham. TAIR10: MAK10 homologue | chr2:4341328-4347768 REVERSE LENGTH=728 | SoyBase | E_val: 0 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0016407 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyltransferase activity | SoyBase | N/A | ISS |
| KOG2343 | KOG | Glucose-repressible protein and related proteins | JGI | ISS | |
| PTHR21373 | Panther | GLUCOSE REPRESSIBLE PROTEIN MAK10 | JGI | ISS | |
| PF04112 | PFAM | Mak10 subunit, NatC N(alpha)-terminal acetyltransferase | JGI | ISS | |
| UniRef100_B9T127 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9T127_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EC61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EC61 related cluster n=1 Tax=unknown RepID=UPI000233EC61 | SoyBase | E_val: 0 | ISS |
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Glyma17g11890 not represented in the dataset |
Glyma17g11890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g22980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g110600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11890.2 sequence type=transcript gene model=Glyma17g11890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAATGCAAAGACATGGATTGGATGGATCCATTGTCCATAGCATACCCTAAACTAAACCCTCCATTCCAAACTCAACCAAAGTCGTTCAGAGAGAGTGTTTACACAAAGCCTGAACCTCAACCTAAAGTGAAAAACACACACACTTGCTAGTCCCTTCACAATCACAAGGTTGAAGAAGACATGGCCGAGGATCGCAGCCTCCCTCCACGCGCCTCCATTCCCTCCGCCGATAACTCCGTTTGGGCCGATGTCTCCCCTCTCCTCCAAGCCGCCTGCCAAGATCTTCAAGAGGGAGAGCTTATTCATGGAGACAACTTCAATCTTTTTGCCGCCATGTCCGCATTGGAGATAATGGACCCGAAGATGGATTCTGGAATTGCTTGTACATACTACTCTCTCGATGAAGCCATTGAGAATGGTGTTGCTCCTGTTCCTATTAGTGCGGATAAAACTACTGATGTTCGATGCATGATTGACATCATGGACCATCTACTTGCCTGTGAGGCAACATGGCACAAGGGTCATTCATTGGCACAAACTGTTTATTCTTGCCTCTATCTTCTACGACCGGAAAGAACATCGTCGCATGCTCTGTTGCACTCTTACTGTAAAGTCATACGTGCAACCTGCAAAGCAATTCTTTCAGTTGTCTCAGAAGCTCGAACACATGAAGAAGAGGATCTATTTACCATGGCATATGGCCTTCCTTTGAGTGGAAATGGGGATGAAAAGTGTTTATCAATGCTAAATGCAGTTGAAGAAACAATATCTCGCCAATTGCGTGCTTGTAAGGCTTCATCGTCAAAAAGAAGAGTGTCAGAAGATGTTGAGCCGCTTCAAAATAATCCTGATCTGGAAGAAGGCTACTGCAAAGCGCTGTTGTGTCGATTACGTTTTCGTAAGCATTTTTACCATCTTTTGATGTCTATGAAACGACCCCAAGGAAGAGGTTTGGAGTTGGCAAGAAAACACATAGCTTCATGCATTTCAGAGATTGATTACATTCGGAAATCTTCAGAATTTCTTAGAGCTAATGCTCATGGAATGTCTGAACAAAACATAGACAATACAACTGCATCTGGTTGTCAACCAATTGGCTTTGATGCTAGTTTAAACTGTAGATTATCTGCCCCAACACCACCCCGGTCAATCAAAATTCTTTCTTTGGAAAAGGCCCTCGAATATTTCATGAAACTCCTTCAAGACCTGGACGTTATATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGCTTCTGCTGGTCCAGGACGGGAAACTCTATGGTCGGGATCCTATGTTTTCTATGATCACTAGAGCTGCTGGATTACCTGAAGTCACAGAGAATCATGACATTCAGAAAAATGAATTTATGGTGCAACTAGGACAGTTGGTGATAAATTTACTCAAAATTCTTTGTACAAATGCTGCATGGCAAAGGCGTAAGCTAGGGAAAATGTTACAAGACTGGCGTGTCACCTATGTACAGCTGGAGATGGCTTTTAAAGGAGAGTTTGCAGAAGCCTCAAAAACTTCAAACAATAAGAAAATATGTTTCAAAATATACCAACACATTCTCGCATGGGTAGAAGAGCAAACTTATTGGATAGCTTTTCGATTTCTCAATTTGGGATTTGAATTGGAGCTCTACTCTGTCCATGACTATTGCATGGTATACTGGTATATTTATGTTGTGTTGATCAAGCTTGCAGAGAAGAAACATCTCCGGATGGCAATGAGCAGTGACTCTGCTAAGAAGAAGACAAAGAAAAAAAGGGATTCTTTTAAGGATGGGGAAATGGATTATCAGATCCCGGCAGCTGTTTTGTTTCTTCAAAGCCAAATATATCTTGCTGAAGGTCTAAGCATGATGTTTGCTGCTTTGAGGAATGAGCGCAGAATAGTTCCACTGCAAAGCCCTTTCAACACAGAACATGAGATATTTATTCAGCAATTCGAGCTTTTACAGAAAGCTTGCGTTCCTGATCACATCTCATATGTGACATTCAAGGAGTCAACTATGCATGCTAATTTCTCTACCCTAGCCATCTGTGATCACTTCAAGGAAGCTCAGAAGATAGCAAAAGAGGTGAAAAGTAGTTTTGCCAATGACCCTGACACGATGGCCGAGCTGCGTAGAGTAGAGCAAGTAGCAGAACGCAACAGCATTGCATTGAATGTTTGTCGGGCAGGAGCCCTTGATCCAAAGTTGAAGACTTTTTTTACATTCTGTCATCATCCTTTCTATGCTACTGCTATTGTGAAGAGATCCTGATAGTAGATTCAACCAATTTTGAAACATTTTATAGGGTGTTAGGAGCAAATGAGTTGTGGCATTAGCAGTTGTAACACTAGTATTTATTCAAACAATTTTTGTGGTTCATATTATTAGATTGAAATTGTAATTTTTTTATCATAAGGAAATAAAACAAATATTTATGGTAATTTTCCTTCCATGGCTGCACCCGAAAAGCAAAAGAGAGGACATGTTTTTTTAGTGTCTTGTTTAAGGCTTTAAACTGCAAAAATGGCA
>Glyma17g11890.1 sequence type=CDS gene model=Glyma17g11890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAGGATCGCAGCCTCCCTCCACGCGCCTCCATTCCCTCCGCCGATAACTCCGTTTGGGCCGATGTCTCCCCTCTCCTCCAAGCCGCCTGCCAAGATCTTCAAGAGGGAGAGCTTATTCATGGAGACAACTTCAATCTTTTTGCCGCCATGTCCGCATTGGAGATAATGGACCCGAAGATGGATTCTGGAATTGCTTGTACATACTACTCTCTCGATGAAGCCATTGAGAATGGTGTTGCTCCTGTTCCTATTAGTGCGGATAAAACTACTGATGTTCGATGCATGATTGACATCATGGACCATCTACTTGCCTGTGAGGCAACATGGCACAAGGGTCATTCATTGGCACAAACTGTTTATTCTTGCCTCTATCTTCTACGACCGGAAAGAACATCGTCGCATGCTCTGTTGCACTCTTACTGTAAAGTCATACGTGCAACCTGCAAAGCAATTCTTTCAGTTGTCTCAGAAGCTCGAACACATGAAGAAGAGGATCTATTTACCATGGCATATGGCCTTCCTTTGAGTGGAAATGGGGATGAAAAGTGTTTATCAATGCTAAATGCAGTTGAAGAAACAATATCTCGCCAATTGCGTGCTTGTAAGGCTTCATCGTCAAAAAGAAGAGTGTCAGAAGATGTTGAGCCGCTTCAAAATAATCCTGATCTGGAAGAAGGCTACTGCAAAGCGCTGTTGTGTCGATTACGTTTTCGTAAGCATTTTTACCATCTTTTGATGTCTATGAAACGACCCCAAGGAAGAGGTTTGGAGTTGGCAAGAAAACACATAGCTTCATGCATTTCAGAGATTGATTACATTCGGAAATCTTCAGAATTTCTTAGAGCTAATGCTCATGGAATGTCTGAACAAAACATAGACAATACAACTGCATCTGGTTGTCAACCAATTGGCTTTGATGCTAGTTTAAACTGTAGATTATCTGCCCCAACACCACCCCGGTCAATCAAAATTCTTTCTTTGGAAAAGGCCCTCGAATATTTCATGAAACTCCTTCAAGACCTGGACGTTATATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGCTTCTGCTGGTCCAGGACGGGAAACTCTATGGTCGGGATCCTATGTTTTCTATGATCACTAGAGCTGCTGGATTACCTGAAGTCACAGAGAATCATGACATTCAGAAAAATGAATTTATGGTGCAACTAGGACAGTTGGTGATAAATTTACTCAAAATTCTTTGTACAAATGCTGCATGGCAAAGGCGTAAGCTAGGGAAAATGTTACAAGACTGGCGTGTCACCTATGTACAGCTGGAGATGGCTTTTAAAGGAGAGTTTGCAGAAGCCTCAAAAACTTCAAACAATAAGAAAATATGTTTCAAAATATACCAACACATTCTCGCATGGGTAGAAGAGCAAACTTATTGGATAGCTTTTCGATTTCTCAATTTGGGATTTGAATTGGAGCTCTACTCTGTCCATGACTATTGCATGGTATACTGGTATATTTATGTTGTGTTGATCAAGCTTGCAGAGAAGAAACATCTCCGGATGGCAATGAGCAGTGACTCTGCTAAGAAGAAGACAAAGAAAAAAAGGGATTCTTTTAAGGATGGGGAAATGGATTATCAGATCCCGGCAGCTGTTTTGTTTCTTCAAAGCCAAATATATCTTGCTGAAGGTCTAAGCATGCTATCCAATTATTTTTCTAGATGTTTGCTGCTTTGA >Glyma17g11890.2 sequence type=CDS gene model=Glyma17g11890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAGGATCGCAGCCTCCCTCCACGCGCCTCCATTCCCTCCGCCGATAACTCCGTTTGGGCCGATGTCTCCCCTCTCCTCCAAGCCGCCTGCCAAGATCTTCAAGAGGGAGAGCTTATTCATGGAGACAACTTCAATCTTTTTGCCGCCATGTCCGCATTGGAGATAATGGACCCGAAGATGGATTCTGGAATTGCTTGTACATACTACTCTCTCGATGAAGCCATTGAGAATGGTGTTGCTCCTGTTCCTATTAGTGCGGATAAAACTACTGATGTTCGATGCATGATTGACATCATGGACCATCTACTTGCCTGTGAGGCAACATGGCACAAGGGTCATTCATTGGCACAAACTGTTTATTCTTGCCTCTATCTTCTACGACCGGAAAGAACATCGTCGCATGCTCTGTTGCACTCTTACTGTAAAGTCATACGTGCAACCTGCAAAGCAATTCTTTCAGTTGTCTCAGAAGCTCGAACACATGAAGAAGAGGATCTATTTACCATGGCATATGGCCTTCCTTTGAGTGGAAATGGGGATGAAAAGTGTTTATCAATGCTAAATGCAGTTGAAGAAACAATATCTCGCCAATTGCGTGCTTGTAAGGCTTCATCGTCAAAAAGAAGAGTGTCAGAAGATGTTGAGCCGCTTCAAAATAATCCTGATCTGGAAGAAGGCTACTGCAAAGCGCTGTTGTGTCGATTACGTTTTCGTAAGCATTTTTACCATCTTTTGATGTCTATGAAACGACCCCAAGGAAGAGGTTTGGAGTTGGCAAGAAAACACATAGCTTCATGCATTTCAGAGATTGATTACATTCGGAAATCTTCAGAATTTCTTAGAGCTAATGCTCATGGAATGTCTGAACAAAACATAGACAATACAACTGCATCTGGTTGTCAACCAATTGGCTTTGATGCTAGTTTAAACTGTAGATTATCTGCCCCAACACCACCCCGGTCAATCAAAATTCTTTCTTTGGAAAAGGCCCTCGAATATTTCATGAAACTCCTTCAAGACCTGGACGTTATATGTTCATACTCATTGGACCCATCATTGGAAGCTGCTTTACTCTTTGTGATTAAATTCCAGAAATCTCAACCTGATTTGGTTGCTAGAGCCCATCTTCAGCTTCTGCTGGTCCAGGACGGGAAACTCTATGGTCGGGATCCTATGTTTTCTATGATCACTAGAGCTGCTGGATTACCTGAAGTCACAGAGAATCATGACATTCAGAAAAATGAATTTATGGTGCAACTAGGACAGTTGGTGATAAATTTACTCAAAATTCTTTGTACAAATGCTGCATGGCAAAGGCGTAAGCTAGGGAAAATGTTACAAGACTGGCGTGTCACCTATGTACAGCTGGAGATGGCTTTTAAAGGAGAGTTTGCAGAAGCCTCAAAAACTTCAAACAATAAGAAAATATGTTTCAAAATATACCAACACATTCTCGCATGGGTAGAAGAGCAAACTTATTGGATAGCTTTTCGATTTCTCAATTTGGGATTTGAATTGGAGCTCTACTCTGTCCATGACTATTGCATGGTATACTGGTATATTTATGTTGTGTTGATCAAGCTTGCAGAGAAGAAACATCTCCGGATGGCAATGAGCAGTGACTCTGCTAAGAAGAAGACAAAGAAAAAAAGGGATTCTTTTAAGGATGGGGAAATGGATTATCAGATCCCGGCAGCTGTTTTGTTTCTTCAAAGCCAAATATATCTTGCTGAAGGTCTAAGCATGATGTTTGCTGCTTTGAGGAATGAGCGCAGAATAGTTCCACTGCAAAGCCCTTTCAACACAGAACATGAGATATTTATTCAGCAATTCGAGCTTTTACAGAAAGCTTGCGTTCCTGATCACATCTCATATGTGACATTCAAGGAGTCAACTATGCATGCTAATTTCTCTACCCTAGCCATCTGTGATCACTTCAAGGAAGCTCAGAAGATAGCAAAAGAGGTGAAAAGTAGTTTTGCCAATGACCCTGACACGATGGCCGAGCTGCGTAGAGTAGAGCAAGTAGCAGAACGCAACAGCATTGCATTGAATGTTTGTCGGGCAGGAGCCCTTGATCCAAAGTTGAAGACTTTTTTTACATTCTGTCATCATCCTTTCTATGCTACTGCTATTGTGAAGAGATCCTGA
>Glyma17g11890.1 sequence type=predicted peptide gene model=Glyma17g11890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDRSLPPRASIPSADNSVWADVSPLLQAACQDLQEGELIHGDNFNLFAAMSALEIMDPKMDSGIACTYYSLDEAIENGVAPVPISADKTTDVRCMIDIMDHLLACEATWHKGHSLAQTVYSCLYLLRPERTSSHALLHSYCKVIRATCKAILSVVSEARTHEEEDLFTMAYGLPLSGNGDEKCLSMLNAVEETISRQLRACKASSSKRRVSEDVEPLQNNPDLEEGYCKALLCRLRFRKHFYHLLMSMKRPQGRGLELARKHIASCISEIDYIRKSSEFLRANAHGMSEQNIDNTTASGCQPIGFDASLNCRLSAPTPPRSIKILSLEKALEYFMKLLQDLDVICSYSLDPSLEAALLFVIKFQKSQPDLVARAHLQLLLVQDGKLYGRDPMFSMITRAAGLPEVTENHDIQKNEFMVQLGQLVINLLKILCTNAAWQRRKLGKMLQDWRVTYVQLEMAFKGEFAEASKTSNNKKICFKIYQHILAWVEEQTYWIAFRFLNLGFELELYSVHDYCMVYWYIYVVLIKLAEKKHLRMAMSSDSAKKKTKKKRDSFKDGEMDYQIPAAVLFLQSQIYLAEGLSMLSNYFSRCLLL* >Glyma17g11890.2 sequence type=predicted peptide gene model=Glyma17g11890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDRSLPPRASIPSADNSVWADVSPLLQAACQDLQEGELIHGDNFNLFAAMSALEIMDPKMDSGIACTYYSLDEAIENGVAPVPISADKTTDVRCMIDIMDHLLACEATWHKGHSLAQTVYSCLYLLRPERTSSHALLHSYCKVIRATCKAILSVVSEARTHEEEDLFTMAYGLPLSGNGDEKCLSMLNAVEETISRQLRACKASSSKRRVSEDVEPLQNNPDLEEGYCKALLCRLRFRKHFYHLLMSMKRPQGRGLELARKHIASCISEIDYIRKSSEFLRANAHGMSEQNIDNTTASGCQPIGFDASLNCRLSAPTPPRSIKILSLEKALEYFMKLLQDLDVICSYSLDPSLEAALLFVIKFQKSQPDLVARAHLQLLLVQDGKLYGRDPMFSMITRAAGLPEVTENHDIQKNEFMVQLGQLVINLLKILCTNAAWQRRKLGKMLQDWRVTYVQLEMAFKGEFAEASKTSNNKKICFKIYQHILAWVEEQTYWIAFRFLNLGFELELYSVHDYCMVYWYIYVVLIKLAEKKHLRMAMSSDSAKKKTKKKRDSFKDGEMDYQIPAAVLFLQSQIYLAEGLSMMFAALRNERRIVPLQSPFNTEHEIFIQQFELLQKACVPDHISYVTFKESTMHANFSTLAICDHFKEAQKIAKEVKSSFANDPDTMAELRRVEQVAERNSIALNVCRAGALDPKLKTFFTFCHHPFYATAIVKRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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