Glyma17g11880 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g11880

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8924532
stop:	8929367
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20260	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr5:6836806-6839532 REVERSE LENGTH=458	SoyBase	E_val: 3.00E-148	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7JFD7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylogalacturonan beta-1,3-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JFD7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC60	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC60 related cluster n=1 Tax=unknown RepID=UPI000233EC60	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11880

Paralog	Evidence	Comments
Glyma13g23000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g110500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11880

Limit To All Plant Sequences

>Glyma17g11880.2   sequence type=CDS   gene model=Glyma17g11880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCAATTTATGGAATCGAGGGACACTTAATAGCCCAAATAGACAATAGAACAGGCCCATTCTTGGCCCGCTATCCAGATGAGGCCCATGTCTTCATGCTACCCATAAGTGTGACCCAAATCGTGCGATACGTATACAATCCTCTCACCACCTACTCTCGTGATCAATTGATGCGGATCACCGTTGATTATACCAACATCATAGCCCACAGGTACCCATACTGGAACAGGACCAAAGGAGCAGATCATTTCCTAGCCTCTTGTCATGACTGGGCACCAGATATCTCGAGAGAGGAATCAGGCAGGGAGCTTTTCAAGAACATAATAAGAGTGTTATGTAATGCCAACACGTCAGAAGGATTTAAGCCTGAAAAAGATGTGCCAATGCCTGAAATGAACTTGCAAGGTTTTAAGTTGAGCTCACCAATTCCTGGCTTTGACCTCAATAATCGTTCTATACTTGCTTTCTTCGCTGGTGGGGCTCATGGTAGGATTAGGAAGATACTACTAGAACATTGGAAAGACAAAGATGAAGAAGTTCAAGTGCATGAATATCTTCCCAAAGGTGTTGACTATCAGGGCCTCATGGGACAAAGCAAGTTTTGTTTGTGCCCAAGTGGCTATGAAGTGGCAAGTCCTCGAATTGTGGAGTCTATCAATATAGGATGTGTTCCTGTCATTGTTTCAGATTACTATCAACTTCCCTTTAGTGATGTTCTTGATTGGAGTAAATTTTCCTTGCATATTCCATCAAGAAGGATAGCTGAAATCAAGACAATTCTGAAAAATGTTCCACATGCTAAGTACTTGAAACTACAGAAGAGAGTGATGAAAGTTCAAAGACATTTTGAGTTGAATCGACCGGCCAAGCCGTTTGATGTGTTTCATATGATTCTTCATTCGATATGGCTTAGACGGCTCAATATCAGGCTACACCATTAA

Predicted protein sequences of Glyma17g11880

Limit To All Plant Sequences

>Glyma17g11880.2   sequence type=predicted peptide   gene model=Glyma17g11880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIYGIEGHLIAQIDNRTGPFLARYPDEAHVFMLPISVTQIVRYVYNPLTTYSRDQLMRITVDYTNIIAHRYPYWNRTKGADHFLASCHDWAPDISREESGRELFKNIIRVLCNANTSEGFKPEKDVPMPEMNLQGFKLSSPIPGFDLNNRSILAFFAGGAHGRIRKILLEHWKDKDEEVQVHEYLPKGVDYQGLMGQSKFCLCPSGYEVASPRIVESINIGCVPVIVSDYYQLPFSDVLDWSKFSLHIPSRRIAEIKTILKNVPHAKYLKLQKRVMKVQRHFELNRPAKPFDVFHMILHSIWLRRLNIRLHH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain