Glyma17g11860 - SoyBase

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Report for Sequence Feature Glyma17g11860

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8902961
stop:	8905996
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G33290	AT	Annotation by Michelle Graham. TAIR10: xylogalacturonan deficient 1 \| chr5:12558439-12561840 FORWARD LENGTH=500	SoyBase	E_val: 0	ISS
GO:0010398	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylogalacturonan metabolic process	SoyBase	N/A	ISS
GO:0045489	GO-bp	Annotation by Michelle Graham. GO Biological Process: pectin biosynthetic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0035252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-xylosyltransferase activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7JFE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylogalacturonan beta-1,3-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JFE4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MU45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11860

Paralog	Evidence	Comments
Glyma13g23020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g110200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11860

Limit To All Plant Sequences

>Glyma17g11860.2   sequence type=CDS   gene model=Glyma17g11860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATGGGATGCTCCAGATGCTCTATTTCTGCACTATTATTCCCCCTGTTTTTCTTTGTCCTTTCCTTCATCTTTTTCTTTCCCTGGAAGAAACAAAACCATCTTACCCATCACTTTGCTTTTGCTCCTCCTTTGGTCCTTTCCACTATCAAAAACTCAGACAACCACACAAATATTAGAACCTCTCTTTCTCCCTCACCACAACCACCACCACCACCATTTGAGCTTCTTTCCAACATTAATCCTGCAAACGACAATTACATGTATAATGGCACTGTTCAAAGTAGTGTCATTCAGAAGGACTTGACTAGTTTGGAGAAAATTGAAGAAGGTTTAGCGCAAGCACGGGCCTCAATTCAGGAATATATCCTATCAAGGAACTATACTTCACAAAGGAGAGAAAGTTTTGTCCCCAAAGGATCCATTTACCGAAATCCCCATGCTTTTCTCCAGAGCCACATAGAGATGGTGAAAAGATTCAAGGTGTGGGTTTACCAAGAAGGGGAACAACCATTAGTACATGATGGTCCAGTAAACAACATATATGCGATTGAAGGTCAATTTATGGACGAAATAGACAATAATGATAAGTGGAGCCAATTCAGGGCAAGACATCCTGAGGAGGCACATGTGTTTTTCCTTCCATTCAGCATTGCCAATGTGGTTCACTATGTCTACAAGCCTATCCTAAAGCAATCTGACTACGAACCTGTCCGTTTGCAACTCTTGGTTGAAGACTATATTAGTGTTATTGAAGATAAATATCCTTACTGGAATAGAAGCAAAGGTGCAGACCATTTTTTGCTTTCGTGTCATGATTGGGCTCCAAAAGTTTCCAATGGCAATCCTGAACTTTTTCAAAGTTTCATTAGGGCACTTTGCAATGCTAACACTTCAGAAGGGTTTCATCCAAATAGAGATGTGTCCATCCCTGAAGTGTACTTGCCTGTTGGAAAGCTAGGTCCGCCGAGCCTAGGCCAGCACCCAAACAGCCGCACTATATTGGCTTTTTTCGCAGGAGGGGTCCATGGAGAAATTAGAAAAATACTTTTAAAACATTGGAAGGACAAAGATAATGAAGTGCGAGTTCATGAATATCTTCCAAAAAGTCAAAATTACACAAAATTAATGGGACAAAGCAAGTTTTGCTTGTGCCCTAGTGGGCATGAAGTTGCAAGTCCCAGAGTGGTTGAAGCAATTCATGCTGGGTGTGTGCCCGTAATAATTTGTGATAATTATTCTCTACCTTTCAGTGATGTGCTGCATTGGAGTCAATTTTCAGTGAAGGTTTCGGTACAAAAAATACCAGAAATCAAAAGTATATTACAAAGTATTTCAAGGAAAAAGTACTTGAGATTGCACATGAATGTGTTAAGAGTTCGAAGACACTTTATGATTAATCGGCCAGCAAAACCATTTGATATGATGCATATGATTCTTCACTCAATTTGGCTGAGAAGGCTAAACATAAAGTTGATTGCTTCATAA

Predicted protein sequences of Glyma17g11860

Limit To All Plant Sequences

>Glyma17g11860.2   sequence type=predicted peptide   gene model=Glyma17g11860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMGCSRCSISALLFPLFFFVLSFIFFFPWKKQNHLTHHFAFAPPLVLSTIKNSDNHTNIRTSLSPSPQPPPPPFELLSNINPANDNYMYNGTVQSSVIQKDLTSLEKIEEGLAQARASIQEYILSRNYTSQRRESFVPKGSIYRNPHAFLQSHIEMVKRFKVWVYQEGEQPLVHDGPVNNIYAIEGQFMDEIDNNDKWSQFRARHPEEAHVFFLPFSIANVVHYVYKPILKQSDYEPVRLQLLVEDYISVIEDKYPYWNRSKGADHFLLSCHDWAPKVSNGNPELFQSFIRALCNANTSEGFHPNRDVSIPEVYLPVGKLGPPSLGQHPNSRTILAFFAGGVHGEIRKILLKHWKDKDNEVRVHEYLPKSQNYTKLMGQSKFCLCPSGHEVASPRVVEAIHAGCVPVIICDNYSLPFSDVLHWSQFSVKVSVQKIPEIKSILQSISRKKYLRLHMNVLRVRRHFMINRPAKPFDMMHMILHSIWLRRLNIKLIAS*

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