Glyma17g11850 - SoyBase

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Report for Sequence Feature Glyma17g11850

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8897844
stop:	8900998
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G42180	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr3:14324300-14328644 REVERSE LENGTH=470	SoyBase	E_val: 1.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7JFE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylogalacturonan beta-1,3-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JFE4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MU43_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11850 not represented in the dataset	Glyma17g11850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g110100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11850

Limit To All Plant Sequences

>Glyma17g11850.2   sequence type=transcript   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACAAGCAAAATTATTCTGTATCAAAAACATATATACTAGTATTTAAAGTGAAAGAAGCGAGTCCTCTTTACATGGTGAAATAAAGATCCTCTTGGAAAAGTTAATATTAATTTCAGTTCTTTAAAAAAAAGAAAAAGAGTGAAAGAGTACTGGGTTGCTTTGGGATAAGAATAGATTGTTTATTTGGTGGGACGTTAAATCATCAATTATTAAGAATTAATGTTATTTTATACATGGTGGTGAAACTGAGGCATCCTGGGGACAGATTTCCAAGTTCTGAAAGAATTAATGAAAGTTTTCAAATCTCGACTGTTTCCGTTGGTCTTTCTAGTGTTCTTCCTCAATGTTTTCCTCGTTTTTTTCACTCCCTCATATGATTATCATATGATTCATCTCCATTCGGATTCTGCTTTCACACTTTCTAGTAGAATCAAAGCCAATCATGTTCTTCCCTCGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAGTTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGTTTAGCACGAGCACGATCATTTATCCAGGAAGCAATTCGATCCAAGATCAACACAACCGCCACGAAAGACAGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAAACAGGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATTGAAGGCCAATTCATCGACGAAATGGACATGGCTAGCATGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTCTTCCTACTTCCCTACAGCGTATCCAAGGTCATTCGCTATGTTTACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGGCGGATTATATCAACATTCTTGCAAATAGATATCCTTATTGGAACAGAAGCAAAGGTGCTGATCATTTTCTTGTTTCATGCCATGATTGGGGTCCAAGAATTTCAGATGCAAATCCCGAACTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAACAGAGATGTGTCCATTCCAGAAGTTTATTTGCCTTCTGGAAAGTTAGGCCCACCTAATATGGGTCAACACCCTAATAACCGCACAATATTAGCCTTTTTTGCTGGTGGAGCCCATGGTAAGATTCGGAAAAAGCTACTCAAGCGTTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGAGTACCTTCCAAAGGGTCAAGACTACACAAAGTTGATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGACATGAAGTAGCAAGTCCTAGGGTGGTGGAAGCAATCTATGCAGGGTGTGTCCCAGTAATAATTTGTGACAATTATTCTTTGCCTTTCATTGATGTGCTTAATTGGAGAAAATTCTCCATGGAAATTGCAGTTGAAAGAATGCCGGAAATTAAGACTATTTTACAAAGTGTTTCAAAAGATAAGTACCTGGAGTTGTATTCAAATGTGAGGAGGGTTCGAAGGCATTTTGTGATCAACAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTTGGCTCAGAAGGCTAAATTTCAAGCTAACAGCTTCCCATTAAGAGGATTCTTTGCGCATAAACACTCCTTTTTCATTTGAAGATGATAATATTACGCTAGAGTTTAGTGACCTTCAGATGAAAATACGTAGTGCAAAGTACAATTTTAATCCTTGTAAGCTACACTTATTTTTACTATTTTATTTCATATACTTTTTTTTCTCTGTAAATTTATTCCTATAACTTCAAACACTGCTATCGAGTAAGTTCTTCACATTCGTCTCAATATAATAGCGTAAGTTTTC

>Glyma17g11850.3   sequence type=transcript   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTTCTTATCCGAACCCTGAAAACAGCTGAACATAATCTAGTAATTTAAATATTTTGAACAAATTAGTTACTACATAAAGAAAAATAATCGAACACAGAACTATTTTAAGTTTTAGCCGAAATAAATAAAGCGGGCCCATTGAGCTTAAGTGATTAATCTTGTTTAGAACAGGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATTGAAGGCCAATTCATCGACGAAATGGACATGGCTAGCATGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTCTTCCTACTTCCCTACAGCGTATCCAAGGTCATTCGCTATGTTTACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGGCGGATTATATCAACATTCTTGCAAATAGATATCCTTATTGGAACAGAAGCAAAGGTGCTGATCATTTTCTTGTTTCATGCCATGATTGGGGTCCAAGAATTTCAGATGCAAATCCCGAACTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAACAGAGATGTGTCCATTCCAGAAGTTTATTTGCCTTCTGGAAAGTTAGGCCCACCTAATATGGGTCAACACCCTAATAACCGCACAATATTAGCCTTTTTTGCTGGTGGAGCCCATGGTAAGATTCGGAAAAAGCTACTCAAGCGTTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGAGTACCTTCCAAAGGGTCAAGACTACACAAAGTTGATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGACATGAAGTAGCAAGTCCTAGGGTGGTGGAAGCAATCTATGCAGGGTGTGTCCCAGTAATAATTTGTGACAATTATTCTTTGCCTTTCATTGATGTGCTTAATTGGAGAAAATTCTCCATGGAAATTGCAGTTGAAAGAATGCCGGAAATTAAGACTATTTTACAAAGTGTTTCAAAAGATAAGTACCTGGAGTTGTATTCAAATGTGAGGAGGGTTCGAAGGCATTTTGTGATCAACAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTTGGCTCAGAAGGCTAAATTTCAAGCTAACAGCTTCCCATTAAGAGGATTCTTTGCGCATAAACACTCCTTTTTCATTTGAAGATGATAATATTACGCTAGAGTTTAGTGACCTTCAGATGAAAATACGTAGTGCAAAGTACAATTTTAATCCTTGTAAGCTACACTTATTTTTACTATTTTATTTCATATACTTTTTTTTCTCTGTAAATTTATTCCTATAACTTCAAACACTGCTATCGAGTAAGTTCTTCACATTCGTCTCAATATAATAGCGTAAGTTTTC

Coding sequences of Glyma17g11850

Limit To All Plant Sequences

>Glyma17g11850.1   sequence type=CDS   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTTTTCAAATCTCGACTGTTTCCGTTGGTCTTTCTAGTGTTCTTCCTCAATGTTTTCCTCGTTTTTTTCACTCCCTCATATGATTATCATATGATTCATCTCCATTCGGATTCTGCTTTCACACTTTCTAGTAGAATCAAAGCCAATCATGTTCTTCCCTCGACCTCTGCAAATGACAGCTACAGCAATGAAGTTGATGAAGTGATTAAGTTTGGCCATGTCATGAAGAATGTGACTAGTTTGAAGAGGATTGAAGAAGGTTTAGCACGAGCACGATCATTTATCCAGGAAGCAATTCGATCCAAGATCAACACAACCGCCACGAAAGACAGTTTTGTCCCAAAAGACTCCATTTACTGGAATCCACACGCTTTTCACCAGAGCCATGTGGAGATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATTGAAGGCCAATTCATCGACGAAATGGACATGGCTAGCATGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTCTTCCTACTTCCCTACAGCGTATCCAAGGTCATTCGCTATGTTTACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGGCGGATTATATCAACATTCTTGCAAATAGATATCCTTATTGGAACAGAAGCAAAGGTGCTGATCATTTTCTTGTTTCATGCCATGATTGGGGTCCAAGAATTTCAGATGCAAATCCCGAACTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAACAGAGATGTGTCCATTCCAGAAGTTTATTTGCCTTCTGGAAAGTTAGGCCCACCTAATATGGGTCAACACCCTAATAACCGCACAATATTAGCCTTTTTTGCTGGTGGAGCCCATGGTAAGATTCGGAAAAAGCTACTCAAGCGTTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGAGTACCTTCCAAAGGGTCAAGACTACACAAAGTTGATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGACATGAAGTAGCAAGTCCTAGGGTGGTGGAAGCAATCTATGCAGGGTGTGTCCCAGTAATAATTTGTGACAATTATTCTTTGCCTTTCATTGATGTGCTTAATTGGAGAAAATTCTCCATGGAAATTGCAGTTGAAAGAATGCCGGAAATTAAGACTATTTTACAAAGTGTTTCAAAAGATAAGTACCTGGAGTTGTATTCAAATGTGAGGAGGGTTCGAAGGCATTTTGTGATCAACAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTTGGCTCAGAAGGCTAAATTTCAAGCTAACAGCTTCCCATTAA

>Glyma17g11850.2   sequence type=CDS   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATTGAAGGCCAATTCATCGACGAAATGGACATGGCTAGCATGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTCTTCCTACTTCCCTACAGCGTATCCAAGGTCATTCGCTATGTTTACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGGCGGATTATATCAACATTCTTGCAAATAGATATCCTTATTGGAACAGAAGCAAAGGTGCTGATCATTTTCTTGTTTCATGCCATGATTGGGGTCCAAGAATTTCAGATGCAAATCCCGAACTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAACAGAGATGTGTCCATTCCAGAAGTTTATTTGCCTTCTGGAAAGTTAGGCCCACCTAATATGGGTCAACACCCTAATAACCGCACAATATTAGCCTTTTTTGCTGGTGGAGCCCATGGTAAGATTCGGAAAAAGCTACTCAAGCGTTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGAGTACCTTCCAAAGGGTCAAGACTACACAAAGTTGATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGACATGAAGTAGCAAGTCCTAGGGTGGTGGAAGCAATCTATGCAGGGTGTGTCCCAGTAATAATTTGTGACAATTATTCTTTGCCTTTCATTGATGTGCTTAATTGGAGAAAATTCTCCATGGAAATTGCAGTTGAAAGAATGCCGGAAATTAAGACTATTTTACAAAGTGTTTCAAAAGATAAGTACCTGGAGTTGTATTCAAATGTGAGGAGGGTTCGAAGGCATTTTGTGATCAACAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTTGGCTCAGAAGGCTAAATTTCAAGCTAACAGCTTCCCATTAA

>Glyma17g11850.3   sequence type=CDS   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGAGGTTAAAGGTTTGGGCATACAAGGAAGGGGAGCAGCCATTGGTGCATGATGGGCCTGTAAACAATAAATACTCCATTGAAGGCCAATTCATCGACGAAATGGACATGGCTAGCATGAGCCCATTCAAGGCTACCCATCCTGAACAGGCCCATCTCTTCCTACTTCCCTACAGCGTATCCAAGGTCATTCGCTATGTTTACAAGCCCAGAAGGTCCAGATCCGATTATGATCCTGATCGCTTACAACGCTTGGTGGCGGATTATATCAACATTCTTGCAAATAGATATCCTTATTGGAACAGAAGCAAAGGTGCTGATCATTTTCTTGTTTCATGCCATGATTGGGGTCCAAGAATTTCAGATGCAAATCCCGAACTCTTCAAGTACTTCATCAGGGCACTTTGCAATGCCAACACTTCAGAAGGATTCCAGCCCAACAGAGATGTGTCCATTCCAGAAGTTTATTTGCCTTCTGGAAAGTTAGGCCCACCTAATATGGGTCAACACCCTAATAACCGCACAATATTAGCCTTTTTTGCTGGTGGAGCCCATGGTAAGATTCGGAAAAAGCTACTCAAGCGTTGGAAAAACAAAGATAAAGAAGTGCAAGTTCACGAGTACCTTCCAAAGGGTCAAGACTACACAAAGTTGATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGACATGAAGTAGCAAGTCCTAGGGTGGTGGAAGCAATCTATGCAGGGTGTGTCCCAGTAATAATTTGTGACAATTATTCTTTGCCTTTCATTGATGTGCTTAATTGGAGAAAATTCTCCATGGAAATTGCAGTTGAAAGAATGCCGGAAATTAAGACTATTTTACAAAGTGTTTCAAAAGATAAGTACCTGGAGTTGTATTCAAATGTGAGGAGGGTTCGAAGGCATTTTGTGATCAACAGGCCAGCAAAGCCATTTGATTTGATACATATGATTCTTCACTCACTTTGGCTCAGAAGGCTAAATTTCAAGCTAACAGCTTCCCATTAA

Predicted protein sequences of Glyma17g11850

Limit To All Plant Sequences

>Glyma17g11850.1   sequence type=predicted peptide   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVFKSRLFPLVFLVFFLNVFLVFFTPSYDYHMIHLHSDSAFTLSSRIKANHVLPSTSANDSYSNEVDEVIKFGHVMKNVTSLKRIEEGLARARSFIQEAIRSKINTTATKDSFVPKDSIYWNPHAFHQSHVEMMKRLKVWAYKEGEQPLVHDGPVNNKYSIEGQFIDEMDMASMSPFKATHPEQAHLFLLPYSVSKVIRYVYKPRRSRSDYDPDRLQRLVADYINILANRYPYWNRSKGADHFLVSCHDWGPRISDANPELFKYFIRALCNANTSEGFQPNRDVSIPEVYLPSGKLGPPNMGQHPNNRTILAFFAGGAHGKIRKKLLKRWKNKDKEVQVHEYLPKGQDYTKLMGLSKFCLCPSGHEVASPRVVEAIYAGCVPVIICDNYSLPFIDVLNWRKFSMEIAVERMPEIKTILQSVSKDKYLELYSNVRRVRRHFVINRPAKPFDLIHMILHSLWLRRLNFKLTASH*

>Glyma17g11850.2   sequence type=predicted peptide   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKRLKVWAYKEGEQPLVHDGPVNNKYSIEGQFIDEMDMASMSPFKATHPEQAHLFLLPYSVSKVIRYVYKPRRSRSDYDPDRLQRLVADYINILANRYPYWNRSKGADHFLVSCHDWGPRISDANPELFKYFIRALCNANTSEGFQPNRDVSIPEVYLPSGKLGPPNMGQHPNNRTILAFFAGGAHGKIRKKLLKRWKNKDKEVQVHEYLPKGQDYTKLMGLSKFCLCPSGHEVASPRVVEAIYAGCVPVIICDNYSLPFIDVLNWRKFSMEIAVERMPEIKTILQSVSKDKYLELYSNVRRVRRHFVINRPAKPFDLIHMILHSLWLRRLNFKLTASH*

>Glyma17g11850.3   sequence type=predicted peptide   gene model=Glyma17g11850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKRLKVWAYKEGEQPLVHDGPVNNKYSIEGQFIDEMDMASMSPFKATHPEQAHLFLLPYSVSKVIRYVYKPRRSRSDYDPDRLQRLVADYINILANRYPYWNRSKGADHFLVSCHDWGPRISDANPELFKYFIRALCNANTSEGFQPNRDVSIPEVYLPSGKLGPPNMGQHPNNRTILAFFAGGAHGKIRKKLLKRWKNKDKEVQVHEYLPKGQDYTKLMGLSKFCLCPSGHEVASPRVVEAIYAGCVPVIICDNYSLPFIDVLNWRKFSMEIAVERMPEIKTILQSVSKDKYLELYSNVRRVRRHFVINRPAKPFDLIHMILHSLWLRRLNFKLTASH*

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