SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20260 | AT | Annotation by Michelle Graham. TAIR10: Exostosin family protein | chr5:6836806-6839532 REVERSE LENGTH=458 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG1021 | KOG | Acetylglucosaminyltransferase EXT1/exostosin 1 | JGI | ISS | |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | ISS | |
| PTHR11062:SF1 | Panther | EXOSTOSIN RELATED | JGI | ISS | |
| PF03016 | PFAM | Exostosin family | JGI | ISS | |
| UniRef100_G7JFE6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xylogalacturonan beta-1,3-xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JFE6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MU42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MU42_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma17g11840 not represented in the dataset |
Glyma17g11840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g110000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11840.2 sequence type=transcript gene model=Glyma17g11840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTACTCTCGATGCTCCACAGCCTCTATGTTACTCCCATTACTTTTCTCCATTTTCCTTTTCCTTTTCATCATTCACCTCAAGGGAAATCAGCATCTTTCCTTCGAGTTTCCTAATTTCTCCCTTTCCAGCATAAAGGGCATCACAACACAACTACTACGACCCCATGGTCAGTATCTGGCTAACTCTGCATATAGAAGCCTTGAGCATAGAAGTAAGAAAAGGACTAGCTTTGATGTAGTTGAAGAAGGTTTGGCAAAGGCTCGAGCCTCGATCCGGGAAGCAATTCTGTATAGGAACCACAGCAATTCAGGGAAGCAAGAACACTTTATCCCAAAAGGTTCCATTTATAGAAACCCTCATGCTTTTCACCAGAGCCACATGGAGATGGTGAAGAGATTCAAGGTGTGGGTGTACGAGGAAGGAGAGCAACCATTAGTGCATTATGGGCCAGTAAATGATATATACGCCATTGAGGGTCAATTCATTGATGAAATAGACAATAGCAAGAGGAGCCCCTTCAAGGCCAGGAACCCTGATGAGGCACACGCCTTTTTTCTTCCCTTAAGCGTGGTTAATGTGGTTCATTATGTTTACAAACCTTACATGTCGCAAAATGATTATAGCCGTGACCGCCTGCAACGGTTGGTGGAAGATTATATTGGAGTGGTGGCTGATAAGTATCCTTATTGGAACAGAAGCAATGGTGCAGATCATTTTCTCCTTTCCTGTCACGATTGGGCACCAGAAATCTCACATGCCAATCCAGACCTCTTCAAGAACTTTATAAGAGTTTTATGCAATGCCAACAATTCAGAAGGATTTCAACCCAAGAGGGACGTGTCTATCCCTGAAGTGTACTTGCCCGTTGGAAAGCTAGGCCCACCAAATCTGGGCCAACACCCAATGAACCGCACCATATTAGCATTTTTCTCTGGTGGGGCCCATGGTGACATTAGGAAATTGCTTCTTAAGCACTGGAAGGACAAAGATAACCATGTCCAAGTTCATGAGTACCTTCCAAAGGGTCAAAACTATACTGAATTAATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGGTATGAGGTGGCTAGTCCTAGAGTTGTGGAAGCAATTAATGCAGGGTGTGTTCCTGTGATCATTTCTGAGAACTATTCTTTGCCCTTCAGTGATGTGCTTAATTGGAGTCAATTCTCCATACAAATTTCTGTAGAGAATATTTCAGACATCAAGACTATATTACAAAATGTTACACAAAAAAAGTACAAGAAATTGCATAGGAATGTGAGGAGAGTTCAGAGGCATTTTGTGATGAATAGACCAGCTAAGCCATTTGATTTGATGCACATGATACTTCACTCAATTTGGCTCAGAAGACTCAACTTCAGGGTCATGGCTTCACATTAA
>Glyma17g11840.1 sequence type=CDS gene model=Glyma17g11840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGGTGAAGAGATTCAAGGTGTGGGTGTACGAGGAAGGAGAGCAACCATTAGTGCATTATGGGCCAGTAAATGATATATACGCCATTGAGGGTCAATTCATTGATGAAATAGACAATAGCAAGAGGAGCCCCTTCAAGGCCAGGAACCCTGATGAGGCACACGCCTTTTTTCTTCCCTTAAGCGTGGTTAATGTGGTTCATTATGTTTACAAACCTTACATGTCGCAAAATGATTATAGCCGTGACCGCCTGCAACGGTTGGTGGAAGATTATATTGGAGTGGTGGCTGATAAGTATCCTTATTGGAACAGAAGCAATGGTGCAGATCATTTTCTCCTTTCCTGTCACGATTGGGCACCAGAAATCTCACATGCCAATCCAGACCTCTTCAAGAACTTTATAAGAGTTTTATGCAATGCCAACAATTCAGAAGGATTTCAACCCAAGAGGGACGTGTCTATCCCTGAAGTGTACTTGCCCGTTGGAAAGCTAGGCCCACCAAATCTGGGCCAACACCCAATGAACCGCACCATATTAGCATTTTTCTCTGGTGGGGCCCATGGTGACATTAGGAAATTGCTTCTTAAGCACTGGAAGGACAAAGATAACCATGTCCAAGTTCATGAGTACCTTCCAAAGGGTCAAAACTATACTGAATTAATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGGTATGAGGTGGCTAGTCCTAGAGTTGTGGAAGCAATTAATGCAGGGTGTGTTCCTGTGATCATTTCTGAGAACTATTCTTTGCCCTTCAGTGATGTGCTTAATTGGAGTCAATTCTCCATACAAATTTCTGTAGAGAATATTTCAGACATCAAGACTATATTACAAAATGTTACACAAAAAAAGTACAAGAAATTGCATAGGAATGTGAGGAGAGTTCAGAGGCATTTTGTGATGAATAGACCAGCTAAGCCATTTGATTTGATGCACATGATACTTCACTCAATTTGGCTCAGAAGACTCAACTTCAGGGTCATGGCTTCACATTAA >Glyma17g11840.2 sequence type=CDS gene model=Glyma17g11840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTACTCTCGATGCTCCACAGCCTCTATGTTACTCCCATTACTTTTCTCCATTTTCCTTTTCCTTTTCATCATTCACCTCAAGGGAAATCAGCATCTTTCCTTCGAGTTTCCTAATTTCTCCCTTTCCAGCATAAAGGGCATCACAACACAACTACTACGACCCCATGGTCAGTATCTGGCTAACTCTGCATATAGAAGCCTTGAGCATAGAAGTAAGAAAAGGACTAGCTTTGATGTAGTTGAAGAAGGTTTGGCAAAGGCTCGAGCCTCGATCCGGGAAGCAATTCTGTATAGGAACCACAGCAATTCAGGGAAGCAAGAACACTTTATCCCAAAAGGTTCCATTTATAGAAACCCTCATGCTTTTCACCAGAGCCACATGGAGATGGTGAAGAGATTCAAGGTGTGGGTGTACGAGGAAGGAGAGCAACCATTAGTGCATTATGGGCCAGTAAATGATATATACGCCATTGAGGGTCAATTCATTGATGAAATAGACAATAGCAAGAGGAGCCCCTTCAAGGCCAGGAACCCTGATGAGGCACACGCCTTTTTTCTTCCCTTAAGCGTGGTTAATGTGGTTCATTATGTTTACAAACCTTACATGTCGCAAAATGATTATAGCCGTGACCGCCTGCAACGGTTGGTGGAAGATTATATTGGAGTGGTGGCTGATAAGTATCCTTATTGGAACAGAAGCAATGGTGCAGATCATTTTCTCCTTTCCTGTCACGATTGGGCACCAGAAATCTCACATGCCAATCCAGACCTCTTCAAGAACTTTATAAGAGTTTTATGCAATGCCAACAATTCAGAAGGATTTCAACCCAAGAGGGACGTGTCTATCCCTGAAGTGTACTTGCCCGTTGGAAAGCTAGGCCCACCAAATCTGGGCCAACACCCAATGAACCGCACCATATTAGCATTTTTCTCTGGTGGGGCCCATGGTGACATTAGGAAATTGCTTCTTAAGCACTGGAAGGACAAAGATAACCATGTCCAAGTTCATGAGTACCTTCCAAAGGGTCAAAACTATACTGAATTAATGGGCCTAAGCAAGTTCTGCTTGTGCCCTAGTGGGTATGAGGTGGCTAGTCCTAGAGTTGTGGAAGCAATTAATGCAGGGTGTGTTCCTGTGATCATTTCTGAGAACTATTCTTTGCCCTTCAGTGATGTGCTTAATTGGAGTCAATTCTCCATACAAATTTCTGTAGAGAATATTTCAGACATCAAGACTATATTACAAAATGTTACACAAAAAAAGTACAAGAAATTGCATAGGAATGTGAGGAGAGTTCAGAGGCATTTTGTGATGAATAGACCAGCTAAGCCATTTGATTTGATGCACATGATACTTCACTCAATTTGGCTCAGAAGACTCAACTTCAGGGTCATGGCTTCACATTAA
>Glyma17g11840.1 sequence type=predicted peptide gene model=Glyma17g11840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMVKRFKVWVYEEGEQPLVHYGPVNDIYAIEGQFIDEIDNSKRSPFKARNPDEAHAFFLPLSVVNVVHYVYKPYMSQNDYSRDRLQRLVEDYIGVVADKYPYWNRSNGADHFLLSCHDWAPEISHANPDLFKNFIRVLCNANNSEGFQPKRDVSIPEVYLPVGKLGPPNLGQHPMNRTILAFFSGGAHGDIRKLLLKHWKDKDNHVQVHEYLPKGQNYTELMGLSKFCLCPSGYEVASPRVVEAINAGCVPVIISENYSLPFSDVLNWSQFSIQISVENISDIKTILQNVTQKKYKKLHRNVRRVQRHFVMNRPAKPFDLMHMILHSIWLRRLNFRVMASH* >Glyma17g11840.2 sequence type=predicted peptide gene model=Glyma17g11840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLYSRCSTASMLLPLLFSIFLFLFIIHLKGNQHLSFEFPNFSLSSIKGITTQLLRPHGQYLANSAYRSLEHRSKKRTSFDVVEEGLAKARASIREAILYRNHSNSGKQEHFIPKGSIYRNPHAFHQSHMEMVKRFKVWVYEEGEQPLVHYGPVNDIYAIEGQFIDEIDNSKRSPFKARNPDEAHAFFLPLSVVNVVHYVYKPYMSQNDYSRDRLQRLVEDYIGVVADKYPYWNRSNGADHFLLSCHDWAPEISHANPDLFKNFIRVLCNANNSEGFQPKRDVSIPEVYLPVGKLGPPNLGQHPMNRTILAFFSGGAHGDIRKLLLKHWKDKDNHVQVHEYLPKGQNYTELMGLSKFCLCPSGYEVASPRVVEAINAGCVPVIISENYSLPFSDVLNWSQFSIQISVENISDIKTILQNVTQKKYKKLHRNVRRVQRHFVMNRPAKPFDLMHMILHSIWLRRLNFRVMASH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
