Glyma17g11820 - SoyBase

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Report for Sequence Feature Glyma17g11820

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8872981
stop:	8879631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20280	AT	Annotation by Michelle Graham. TAIR10: sucrose phosphate synthase 1F \| chr5:6844994-6849997 REVERSE LENGTH=1043	SoyBase	E_val: 0	ISS
GO:0005985	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0046524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose-phosphate synthase activity	SoyBase	N/A	ISS
KOG0853	KOG	Glycosyltransferase	JGI		ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF28	Panther	SUCROSE PHOSPHATE SYNTASE	JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
PF00862	PFAM	Sucrose synthase	JGI		ISS
PF05116	PFAM	Sucrose-6F-phosphate phosphohydrolase	JGI		ISS
UniRef100_I1MU40	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU40_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9AXK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sucrose-phosphate synthase n=1 Tax=Medicago sativa RepID=Q9AXK3_MEDSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11820

Paralog	Evidence	Comments
Glyma13g23060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g109700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11820

Limit To All Plant Sequences

>Glyma17g11820.1   sequence type=CDS   gene model=Glyma17g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAAACGATTGGCTGAACAGCTACCTTGAAGCGATACTTGACGTCGGGCCTGGCCTGGACGATGCCAAGTCCTCTCTGCTTCTCCGAGAGAGAGGCAGGTTCAGCCCTACTCGCTACTTCGTCGAAGAGGTTATTGGCTTCGATGAGACCGATCTCTATCGCTCTTGGGTTCGGGCTTCCTCCACCAGGAGTCCTCAGGAGAGGAACACCAGGCTGGAGAACATGTGCTGGCGAATTTGGAACCTCGCTCGCCAAAAGAAGCAGCTGGAGAGTGAGACAGCGCAGAGGGTGAACAAGCGTCGTCTGGAGCGCGAGCGAGGGCGCAGGGAAGCCACCGCGGATATGTCTGAGGACTTGTCGGAAGGAGAGAAGGGAGATCCGGTGAGTGACGTGTCGGCTCACGGCGGCGACGCCGCCAACAACCGAGCCAGGTTGCCTAGAATCAGTTCCGCTGATGCCATGGAGACTTGGGCCAACAGTCAGAAAGGGAAGAAGCTCTACATTGTACTCATCAGCATTCATGGCCTAATTCGAGGCGAGAATATGGAGCTAGGACGTGATTCTGACACGGGTGGTCAGGTTAAGTATGTTGTGGAACTTGCGAGGGCATTGGGATCAATGCCAGGAGTTTATCGGGTTGATTTGCTAACTAGACAAGTGTCGGCACCAGATGTAGATTGGAGTTATGGGGAGCCGACAGAAATGTTGTCTCCAAGAGACACAGATGATTTTGGAGATGACATGGGAGAGAGCAGTGGTTCTTATATCGTTCGTATTCCCTTTGGTCCAAGAGATAAATATATTCCAAAAGAACTTCTCTGGCCTTACATTCCTGAATTTGTTGATGGAGCACTTAACCACATTATACAGATGTCCAAGTCTCTTGGGGAACAGATTGGCAGTGGGCATGCTGTCTGGCCTGTTGCCATCCATGGACATTATGCAGATGCAGGTGACTCTGCTACTCTCCTATCTGGCGCATTAAATGTTCCAATGCTTTTTACTGGCCACTCACTTGGCCGAGACAAGTTGGAACAACTTTTAAAGCAAGGTCGACTATCAAAGGATGAAATCAACACAACTTACAAGATTATGCGCAGGATTGAAGCTGAGGAATTGGCCCTTGATGGTTCTGAAATAGTCATCACAAGCACTAAACAGGAAATAGAAGAACAATGGCGCTTGTATGATGGTTTTGATCCTGTATTGGAGCGTAAACTACGAGCAAGGATCAGGCGTAATGTGAGCTGCTATGGGAGATTCATGCCTCGCATGGCGACAATTCCTCCTGGTATGGAGTTCCATCATATTGTTCCACACGATGGCGATATAGAAGGTGAACCAGAAGGAAATTTGGATCATCCTGCCCCCCAAGATCCACCTATTTGGTCTGAGATAATGCGCTTCTTTACCAACCCTCGCAAGCCTATGATACTTGCTCTTGCTAGGCCGGACCCTAAAAAGAACATCACAACTTTGGTAAAAGCATTTGGAGAATGTCGTCCTCTTCGAGAGCTTGCCAACCTTACATTAATTATGGGCAACAGAGATGGAATTGATGAGATGTCAAGCACAAATGCTTCCGTTCTTCTCTCGGTACTTAAGCTGATTGACAAGTATGATCTGTATGGGCAAGTGGCCTATCCTAAACATCACAAACAATATGATGTTCCTGACATATATCGCCTAGCAGCAAAGACAAAGGGTGTTTTCATTAATCCAGCTTTCATTGAGCCATTTGGTCTTACCTTAATTGAGGCAGCTGCTCATGGTTTGCCAATTGTTGCTACTAAAAATGGAGGTCCTGTTGATATTCATAGGGTACTTGACAATGGTCTGCTCATAGATCCCCATGATCAGCAGTCTATTGCTGATGCTCTTTTGAAGCTTGTTAGCAACAAGCAACTTTGGGCAAAATGTAGACAGAATGGGTTAAAGAATATTCATTTATTTTCATGGCCCGAGCACTGTAAGACTTACCTTTCTAAAATAGCCACTTGTAAACCAAGGCATCCACAATGGCAGCGAAGTGAGGATGGAGGTGAAAGTTCAGAATCAGATTCACCAGGTGATTCCTTGAGAGATTTACAGGACTTGTCTCTAAATCTGAAGTTTTCATTAGATGGAGAGAAGAGTGAGGGTAGTGGAAATGACAATTCTTTGAATTCTGATGGAAATGCTGCTGATAGAGGGGCAAAACTAGAGAATGCTGTTTTGTCATGGTCAAAGGGCATCTCTAAGGACATACGCAAGGGTGGGGCTATCGAAAAAACAGATCAAAATCCAAACGCTGGTAAATTTCCTCCATTAAGGAGAAGAAAACATCTATTTGTCATTGCTGTGGATTGTGATACCACTTCAGGCCTTCTTGAAACTATTAAAGCCATCTTTGAGTCTGCTGGAAAGGATAAGGCTGAGGGCACTGTAGGTTTCATATTGTCAACATCATTAACAATATCAGAGATACAGTCCTTTCTAATCTCAGGTGGCTTGAGTCCCATTGATTTTGATGCTTATATTTGCAATAGTGGCAGTGATCTATACTATCCATCCCTCAATCCTGGAGAGCGCCCATTTGTGGTTGACTTGTATTACCACTCACACATTGAATACCGTTGGGGTGGAGAAGGGTTGAGGAAGACTTTAGTGCGATGGGCTGATTCAACCACTGATAAGAAGGGTGATAATGACGAACAAATTGTGAGTCCTGCTGAACAGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGTTGCCATCCTATATATTGTCAAAATGGGACAAGACTGAATGTAATTCCTGTGCTGGCATCTCGTTCCCAAGCTCTCAGATACCTGTATGTTCGATGGGGTTTTGAACTGTCAAAGATGGTGGTGTTCGTCGGAGAATGTGGTGACACAGATTACGAAGGACTTCTTGGTGGTCTACACAGAAGTGTCATACTGAAGGGAGTGGGAAGCAGTGCAATCAGTCAACTCCATAATAACAGAAGCTACCCTCTTTCAGATGTCATGCCATTAGACAGCCCCAACATCATCGAAGCAACTGAGGGGACTAGGGGTGCTGATATCCAGGCTTTGATCGAAAAAGTGGGATATCTCACTGGATGA

Predicted protein sequences of Glyma17g11820

Limit To All Plant Sequences

>Glyma17g11820.1   sequence type=predicted peptide   gene model=Glyma17g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNDWLNSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVEEVIGFDETDLYRSWVRASSTRSPQERNTRLENMCWRIWNLARQKKQLESETAQRVNKRRLERERGRREATADMSEDLSEGEKGDPVSDVSAHGGDAANNRARLPRISSADAMETWANSQKGKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLSPRDTDDFGDDMGESSGSYIVRIPFGPRDKYIPKELLWPYIPEFVDGALNHIIQMSKSLGEQIGSGHAVWPVAIHGHYADAGDSATLLSGALNVPMLFTGHSLGRDKLEQLLKQGRLSKDEINTTYKIMRRIEAEELALDGSEIVITSTKQEIEEQWRLYDGFDPVLERKLRARIRRNVSCYGRFMPRMATIPPGMEFHHIVPHDGDIEGEPEGNLDHPAPQDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTNASVLLSVLKLIDKYDLYGQVAYPKHHKQYDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLIDPHDQQSIADALLKLVSNKQLWAKCRQNGLKNIHLFSWPEHCKTYLSKIATCKPRHPQWQRSEDGGESSESDSPGDSLRDLQDLSLNLKFSLDGEKSEGSGNDNSLNSDGNAADRGAKLENAVLSWSKGISKDIRKGGAIEKTDQNPNAGKFPPLRRRKHLFVIAVDCDTTSGLLETIKAIFESAGKDKAEGTVGFILSTSLTISEIQSFLISGGLSPIDFDAYICNSGSDLYYPSLNPGERPFVVDLYYHSHIEYRWGGEGLRKTLVRWADSTTDKKGDNDEQIVSPAEQLSTDYCYAFKVRKPGMAPPVKELRKLLRIQALRCHPIYCQNGTRLNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLLGGLHRSVILKGVGSSAISQLHNNRSYPLSDVMPLDSPNIIEATEGTRGADIQALIEKVGYLTG*

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