SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05500 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0019745 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0012505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10774 | Panther | CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) | JGI | ISS | |
| PTHR10774:SF23 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_G7JFF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Synaptotagmin-1 n=1 Tax=Medicago truncatula RepID=G7JFF5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MU38 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MU38_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g11800 not represented in the dataset |
Glyma17g11800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g109500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11800.1 sequence type=CDS gene model=Glyma17g11800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGTTATAATGTGCCTTATTTCCAAATTGCTACATGGGCTTCGTCCGCGGCGAGAACTCCCGGGCCGCCCAACGCTCCCAGCTCGCCACCACCGTTGCCGCCTTCGCTCGGATGACCGTCGAAGATTCCAGAAAGATCTTGCCGCCTCAGTTCTACCCTTCCTGGGTCGTTTTCTCTTCCAGCCAGAATTAACTTGGCTTAACTCGCATCTCACCAAGATCTGGCCCTATGTTAACGAGGCTGCTTCTGAGCTCATAAAAGCGTCGGTGGAACCTATTCTGGAAGAATATAGACCCGTGGTTTTGGCGGCTCTTAAATTTTCCAAGTTTACTCTTGGTACTGTAGCTCCACAGTTTACAGGCGTGTCTATAATTGAGGATGGAGGGGATGGTGTTACAATGGAGTTAGAAATGCAATGGGATGGGAACCCAAGTATTATACTTGATATTAAAACTCTTCTTGGTGTTGCACTACCGGTGCAGGTAAAAAATATTGGATTTACGGGTGTTTTTAGGTTGATCTTCAAGCCATTAGTTGATGAATTTCCTGGTTTTGGAGCTGTTAGCTATTCATTAAGGCAAAAGAAAAAGTTGGATTTTACTCTAAAAGTCATTGGTGGCGACATATCAGCAATTCCTGGATTATATGATGCAATAGAGGGGGCAATTCGGGATGCTGTTGAAGATTCTATTACATGGCCCGTGAGAAAAGTTGTACCCATTTTGCCTGGAGATTACAGTGATTTGGAGTTGAAGCCCGAGGGGATATTAGAAGTAAAGCTTGTGCAAGCAAAGGAATTAACAAACAAGGATATCATTGGAAAATCAGATCCATATGCCGTTGTATACATACGGCCTTTACGCGAAAGAATGAAGAAAAGCAAAACAATTAACAATGATTTGAATCCGATTTGGAATGAACACTTTGAATTTGTTGTTGAAGATGTGTCCACTCAGCACGTAACTGTTAAAGTTTATGATTCTGAGGGTTTACAGTCATCTGAATTGATTGGATGTGCTCAGCTACAGCTTAGTGAACTTCAACCTGGTAAAGTAAAGGATGTTTGGTTGAAGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAGGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAAACCCATTTGCTCCCAACTACTCAATGACATCTTTGGAAAAGGTTCTTAAAAATGCGAATGGAGTAGAGTCTAATGGAAATGAAAACGCAGTTACCCAAAAGAAAAAGGAGGTTATTATTAGAGGAGTCCTTTCTGTTACTGTAATATCTGCTGAAGACTTGCCTGCAACAGATTTCATGGGGAAATCTGATCCTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGGGTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTTGTTGAGGATGGATTACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAGGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGGAATACAAAGAACGTTTTGTGCTAGATGGAGCCAAATCTGGCTTTTTGAATTTGCATCTCAAGTGGATGCCGCAACCAATTTTCCGTGATTCTTAG
>Glyma17g11800.1 sequence type=predicted peptide gene model=Glyma17g11800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEVIMCLISKLLHGLRPRRELPGRPTLPARHHRCRLRSDDRRRFQKDLAASVLPFLGRFLFQPELTWLNSHLTKIWPYVNEAASELIKASVEPILEEYRPVVLAALKFSKFTLGTVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRLIFKPLVDEFPGFGAVSYSLRQKKKLDFTLKVIGGDISAIPGLYDAIEGAIRDAVEDSITWPVRKVVPILPGDYSDLELKPEGILEVKLVQAKELTNKDIIGKSDPYAVVYIRPLRERMKKSKTINNDLNPIWNEHFEFVVEDVSTQHVTVKVYDSEGLQSSELIGCAQLQLSELQPGKVKDVWLKLVKDLEIQRDTKNRGQVHLELLYCPFGMENSFTNPFAPNYSMTSLEKVLKNANGVESNGNENAVTQKKKEVIIRGVLSVTVISAEDLPATDFMGKSDPFVVLTLKKAETKNKTRVVNDSLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKERFVLDGAKSGFLNLHLKWMPQPIFRDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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