Glyma17g11781 - SoyBase

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Report for Sequence Feature Glyma17g11781

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8832254
stop:	8833924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11781

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_Q402G4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein GmTDF-5 n=1 Tax=Glycine max RepID=Q402G4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11781

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11781 not represented in the dataset	Glyma17g11781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11781

Paralog	Evidence	Comments
Glyma13g23101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11781 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g109300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11781

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11781

Limit To All Plant Sequences

>Glyma17g11781.1   sequence type=CDS   gene model=Glyma17g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAAGAGAGTGAAAAATCCCCACAATTGGTGCGAGTCCTTGAAGCTCTGAAAGAAGCCACCCACGACATCCAACGACACCACTCCTCGGATTCCCCAGCCATAAAGGCACTCCTGGAACTCCACTCCATTCTCTCCTCCTCGGACCCCTACCTCTCCGCTCTCTCCGACCACCTCATCCGCCTCAAAACCCTCGTCCACTCTCTCAACCACTCCAATGGCCTTCTATCCTTCCTCACTCGCCCCCTCTCCACTCTCTCCCTCTCACGCCTCGCCTCCCAAATCGAGTCCGAAATCCAATCCTGGATCGACCGCGAAACTCTCCACACCCTCTCCTCTTCTCTACGAAACCCTAACAATAACCACGAATTTGTCTCCTTGTTGACTCAGTCCATTTACCGTGTCTCGCAGGGCTTCAATCGCGAGTTGCAGGACCTGGTTCTCAAACTAAAGCTCTTCTCATCGCTGGAGTCGGTTCTGTTCGACGATAAGTGTTCGATCCCGGTTCGGGAACAGGCCGGTCTGGCTGTCTCCGCGTTAATCCGGTTCAATAAAGACGTGTTCGTGGGCCAGGTTCTGATGGGCCCCACCGTCCGGGCTTTGGTCTCGATGGGCTCTGTTCTGTCCCTTGAGGTGCTGTGTTCACTCATCAGGTCCATTAGGTCTCCTCTGGTGGACGAGATCGAGAGCAACGGTGAGATTCCGAATATTATCGCGATGTTGAATTCGGAGGATCTGGAACTGCGTGTTGTTGCGTTGGGGTGCGCGCTGGAGATAGGGTACTTCGGGCGGAAGGAAGCGGTGGAGGCGATGATGAAGGAGGGGTTGGTGGAGAAGCTGGTGGAGTTGCAGAGGTCGGAGAAAGGTGGGGATTTGATTGAGATTGGAAGGGAAAAGGTTAGTGGGGTTTTGGAGAGAAAACCTTTTGCGAGCTGCGTGGCGAGGTTTGCGGTGCAGTTGGAAGTTGGGGAAGGGTTGCGGCAGAGAGAAAAGAGGGCTTTTAAACCTGAGATTTTGATCAGAGTTAGAGACGCCTCTGTTTCTGAAGCCGAAGCTGCCACCATTGCTGCTGAGGTTTTGTGGGGTTCCAGCCCATGA

Predicted protein sequences of Glyma17g11781

Limit To All Plant Sequences

>Glyma17g11781.1   sequence type=predicted peptide   gene model=Glyma17g11781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEESEKSPQLVRVLEALKEATHDIQRHHSSDSPAIKALLELHSILSSSDPYLSALSDHLIRLKTLVHSLNHSNGLLSFLTRPLSTLSLSRLASQIESEIQSWIDRETLHTLSSSLRNPNNNHEFVSLLTQSIYRVSQGFNRELQDLVLKLKLFSSLESVLFDDKCSIPVREQAGLAVSALIRFNKDVFVGQVLMGPTVRALVSMGSVLSLEVLCSLIRSIRSPLVDEIESNGEIPNIIAMLNSEDLELRVVALGCALEIGYFGRKEAVEAMMKEGLVEKLVELQRSEKGGDLIEIGREKVSGVLERKPFASCVARFAVQLEVGEGLRQREKRAFKPEILIRVRDASVSEAEAATIAAEVLWGSSP*

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