Glyma17g11720 - SoyBase

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Report for Sequence Feature Glyma17g11720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8797685
stop:	8800909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20410	AT	Annotation by Michelle Graham. TAIR10: monogalactosyldiacylglycerol synthase 2 \| chr5:6896765-6898581 FORWARD LENGTH=468	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0009247	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolipid biosynthetic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019374	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid metabolic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0030259	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid glycosylation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0035250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-galactosyltransferase activity	SoyBase	N/A	ISS
GO:0046509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	SoyBase	N/A	ISS
PTHR21015	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR21015:SF21	Panther	GLYCOSYLTRANSFERASE 1 FAMILY	JGI		ISS
PF04101	PFAM	Glycosyltransferase family 28 C-terminal domain	JGI		ISS
PF06925	PFAM	Monogalactosyldiacylglycerol (MGDG) synthase	JGI		ISS
UniRef100_G7JGJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Monogalactosyldiacylglycerol synthase n=1 Tax=Medicago truncatula RepID=G7JGJ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11720

Paralog	Evidence	Comments
Glyma13g23150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g108700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11720

Limit To All Plant Sequences

>Glyma17g11720.1   sequence type=CDS   gene model=Glyma17g11720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTTCCGTTTCGTCGCCGTCGCCGTCGCCGAGAAGGTCCATAGCGGAGAAGGTATTCGGAGGTTACTATAATGGGAACAACAGCCACAAAAAACGTGGCAGTGAGGCCCACGATGATGACAGCGATGGAGGCATGGAACTCATGGAGATTGGCGCGGAGAGGACAAAAAACGTGTTGATTCTCATGAGTGATACTGGTGGCGGTCACAGAGCTTCCGCTGAAGCCATTCGTGACGCCTTTCAAATTCAATTCGGTGACGAATACAGGATTTTTGTTAAAGATGTTTGGAAGGAATACACTGGGTGGCCATTGAATGACATGGAGGGGCAGTATAAGTTCATGGTTAAGCATGTACAGTTATGGAATGTTGCGTTTCACAGTACTTCTCCTAGATGGATTCACTCTGTGTATTTGGCTGCCATTGCTGCCTACTATGCCAGGGAGGTGGAGGCGGGGTTGATGGAGTACAAGCCAGATATCATCATCAGTGTCCATCCCTTGATGCAGCATATTCCATTGTGGGTTTTAAAGTGGCAAGGTTTGCAGAAGAAAGTGATTTTTGTCACAGTGATCACTGACCTTAGCACATGCCACCCTACTTGGTTTCATCCTTGGGTGAATAGATGTTACTGCCCTTCACAAGAAGTGGCCACGAAAGCCTCACAAGATGGCCTTGAGGAATCTCAAATCCGAGTTTTCGGCTTGCCCATTAGGCCTTCTTTTGCCAGGGCAGTTCTTGTCAAGGAACAATTGAGAGAAGAACTTGGGTTGGATCCCAACTTGCAAGCAGTTTTGCTGATGGGGGGTGGTGAAGGAATGGGTCCTGTGAAGAAAACTGCAAAGGCTCTTGGAGAAGCACTTTTCGATAAAGAAGCTGAGAAACCAATTGGGCAGTTAATCATCATATGTGGTCGTAACAAGAGCTTAGTATCTACCCTTGAATCTCTTGAATGGAAGATTCCAGTAAAGGTTAGAGGATTTGAGACCCAGATGGCCAAATGGATGGGAGCCTGTGACTGCATCATAACAAAAGCTGGACCAGGTACAATTGCGGAATCATTGATCAGAGGGCTTCCCATAATCCTCAATGACTACATCCCCGGACAAGAGAAGGGTAACGTGCCTTATGTGGTAAACAATGGAGCTGGTGTCTTCACTCGTAGTCCAAAGGAAACAGCAAGAATTGTGGCCGAATGGTTCACCACAAAATCAGATGAGAGGAAAACAATGTCAGAGAATGCACTTAAACTGGCACAACCAGAGGCCGTGTTTGACATCGTAAGGGACATTCATGAGCTTGCTGAGCAACGAGAGCCAGCAAAGTTTCCATACTTGTTGACCTCATCATTTACTAGCCTAATCTGA

Predicted protein sequences of Glyma17g11720

Limit To All Plant Sequences

>Glyma17g11720.1   sequence type=predicted peptide   gene model=Glyma17g11720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSVSSPSPSPRRSIAEKVFGGYYNGNNSHKKRGSEAHDDDSDGGMELMEIGAERTKNVLILMSDTGGGHRASAEAIRDAFQIQFGDEYRIFVKDVWKEYTGWPLNDMEGQYKFMVKHVQLWNVAFHSTSPRWIHSVYLAAIAAYYAREVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQGLQKKVIFVTVITDLSTCHPTWFHPWVNRCYCPSQEVATKASQDGLEESQIRVFGLPIRPSFARAVLVKEQLREELGLDPNLQAVLLMGGGEGMGPVKKTAKALGEALFDKEAEKPIGQLIIICGRNKSLVSTLESLEWKIPVKVRGFETQMAKWMGACDCIITKAGPGTIAESLIRGLPIILNDYIPGQEKGNVPYVVNNGAGVFTRSPKETARIVAEWFTTKSDERKTMSENALKLAQPEAVFDIVRDIHELAEQREPAKFPYLLTSSFTSLI*

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