SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15690 | AT | Annotation by Michelle Graham. TAIR10: Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770 | SoyBase | E_val: 0 | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0010248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: establishment or maintenance of transmembrane electrochemical gradient | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0010008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004427 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity | SoyBase | N/A | ISS |
| GO:0009678 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen-translocating pyrophosphatase activity | SoyBase | N/A | ISS |
| PF03030 | PFAM | Inorganic H+ pyrophosphatase | JGI | ISS | |
| UniRef100_O22124 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proton pyrophosphatase n=1 Tax=Vigna radiata RepID=O22124_VIGRA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001B6375A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B6375A related cluster n=1 Tax=unknown RepID=UPI0001B6375A | SoyBase | E_val: 0 | ISS |
|
Glyma17g11705 not represented in the dataset |
Glyma17g11705 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g108500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11705.1 sequence type=CDS gene model=Glyma17g11705 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCAGTGATTCTCCCAGATCTCGGCACCGAGATTTTGATTCCCGTCTGCGCCATCATTGGAATAGCGTTCGCCCTCTTCCAGTGGGTCCTCGTCTCTAAGGTCAAGCTCTCCGCTGCGAGAGACGCTTCCTCCAACGCCGGCGGCGGCAAAAATGGCTACAACGATTACCTCATCGAAGAAGAGGAAGGCCTCAACGACCACAACGTCGTCCTCAAATGCGCCGAAATCCAAAACGCCATTTCCGAAGGAGCAACCTCTTTCCTTTTCACTGAGTATAAGTACGTGGGAATCTTCATGGTGGCTTTTGCCATTTTGATATTCCTCTTCCTTGGCTCTGTGGAAGGATTCAGCACAAGCTACCAGCCTTGCACCTATGACCAAACTAAAATGTGTAAGCCAGCTCTTGCCACTGCTGTTTTCAGCACCATATCTTTCCTGCTTGGAGGTGTCACATCGCTTATTTCTGGATTCCTTGGAATGAAAATTGCAACTTATGCCAATGCAAGAACCACCCTGGAGGCAAGAAAGGGTGTTGGAAAGGCTTTCATTACGGCTTTTAGATCTGGTGCAGTTATGGGTTTTCTCCTTGCTGCAAATGGTCTTTTGGTTCTTTACATTGCCATCAACTTGTTCAAGATTTACTATGGTGATGACTGGGGTGGTCTTTTTGAGGCCATCACTGGTTATGGTCTTGGTGGGTCTTCTATGGCTTTGTTTGGAAGAGTAGGTGGAGGTATCTATACTAAGGCTGCTGATGTTGGTGCTGATCTTGTCGGAAAGGTCGAAAGAAACATCCCGGAAGATGATCCAAGAAATCCAGCTGTGATTGCTGATAATGTTGGTGATAATGTTGGTGATATCGCTGGTATGGGATCTGATCTTTTTGGTTCATATGCCGAGTCATCCTGTGCTGCTCTTGTTGTTGCTTCCATCTCTTCTTTTGGGGTGAATCATGAGTTGACTGCTATGTTATACCCTCTAATTATCAGTTCTGTGGGTATCCTTGTTTGTTTGCTCACAACTTTATTTGCAACTGACTTCTTTGAGATCAAGGCTGTAAAGGAGATTGAGCCTGCATTGAAGAAACAGCTCATCATTTCCACTGCCTTGATGACTATTGGGATTGCAATTGTTAGTTGGATTGCACTCCCAACTTCCTTCACTATCTTCAATTTTGGAGTGCAGAAAGATGTCAAGAATTGGCAGCTATTCTTGTGTGTTGCTGTTGGTCTTTGGGCAGGGCTTATTATTGGATTTGTAACTGAGTACTATACTAGCAATGCATATAGTCCGGTGCAAGACGTTGCAGACTCCTGCAGGACTGGTGCTGCAACTAATGTTATCTTTGGCCTTGCCTTGGGATACAATATTTTTGTTAGTTTCACCTTTGCTGCCATGTATGGTATTGCCGTTGCTGCACTTGGCATGCTGAGTACCATTGCCACCGGATTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGTATTGCTGAGATGGCCGGTATGAGTCACAGAATTAGAGAGAGAACTGATGCCCTTGATGCTGCCGGAAACACAACTGCCGCAATTGGGAAGGGATTTGCCATCGGTTCTGCTGCCCTTGTATCTCTGGCCCTCTTTGGTGCCTTTGTGAGCCGAGCTGCTATTACAACTGTTGATGTGTTGACTCCAAAGGTTTTCATTGGTTTGATTGTGGGTGCAATGCTTCCTTACTGGTTTTCTGCCATGACCATGAAGAGTGTGGGAAGTGCTGCTCTGAAGATGGTTGAGGAAGTACGCAGGCAATTCAACACCATTCCAGGATTGATGGAGGGAACTGCTAAGCCTGACTACGCCACTTGTGTTAAGATCTCCACTGATGCTTCCATTAAAGAAATGATTCCACCTGGTGCTCTTGTCATGCTTACACCCCTTGTTGTTGGAATCCTTTTTGGTGTCGAAACACTTTCTGGTGTCCTAGCTGGATCTTTGGTGTCTGGTGTACAGATTGCTATCTCTGCATCCAACACCGGTGGTGCTTGGGATAATGCCAAGAAGTACATTGAGGCTGGTGCTTCTGAGCATGCAAGGAGCCTTGGTCCAAAAGGGTCAGATTGTCACAAGGCAGCTGTTATTGGTGACACCATTGGAGACCCCCTCAAGGATACATCAGGGCCTTCACTTAACATCCTTATCAAGCTCATGGCCGTTGAGTCTCTTGTGTTTGCTCCCTTCTTTGCGACACATGGTGGCCTACTCTTCAAGATCTAA
>Glyma17g11705.1 sequence type=predicted peptide gene model=Glyma17g11705 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAVILPDLGTEILIPVCAIIGIAFALFQWVLVSKVKLSAARDASSNAGGGKNGYNDYLIEEEEGLNDHNVVLKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSYQPCTYDQTKMCKPALATAVFSTISFLLGGVTSLISGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGVNHELTAMLYPLIISSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLIISTALMTIGIAIVSWIALPTSFTIFNFGVQKDVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYNIFVSFTFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
