Glyma17g11670 - SoyBase

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Report for Sequence Feature Glyma17g11670

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8751903
stop:	8755597
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34940	AT	Annotation by Michelle Graham. TAIR10: glucuronidase 3 \| chr5:13235912-13238718 REVERSE LENGTH=536	SoyBase	E_val: 0	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004566	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-glucuronidase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PTHR14363	Panther	HEPARANASE-RELATED	JGI		ISS
PTHR14363:SF7	Panther	HEPARANASE-RELATED	JGI		ISS
PF03662	PFAM	Glycosyl hydrolase family 79, N-terminal domain	JGI		ISS
UniRef100_G7JGL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heparanase-like protein n=1 Tax=Medicago truncatula RepID=G7JGL1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU24_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11670

Paralog	Evidence	Comments
Glyma13g23190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g108200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11670

Limit To All Plant Sequences

>Glyma17g11670.1   sequence type=CDS   gene model=Glyma17g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCAGATAAGGCTTCTGGGCCTGTGTCTTTGGATGTACTTGGCATGCTTAAGCTTCATTGGTGTGGGTGCTGTGTATGGAAGAGAAGGTGAAGTTTTGGAAGGGATTGTTTTAGTTCATGGGAAAACTGCTATTGGAAGGATTGATGATGATTCTATCTGTGCAACCCTGGATTGGTGGCCTTCTCAGAAATGTGACTATGGAAAATGCAGTTGGGGTCATGCTTCTCTGCTCAATCTGGACCTCAACAACAAAATTTTGTTAAATGCAGTAAAAGCCTTTTCACCCTTGAAAATTAGATTAGGTGGCACTTTGCAAGACAAGGTCATATATGGAACTGAAGATTGTCGTCAACCCTGTACTCCTTTTGTTTTGAATGCGAATGAAATGTTTGGTTTCACTCAAGGGTGCTTACCGATGTATAGGTGGGATGAGCTAAACAGCTTTTTCCAAAAAGCAGGGGTTAAGGTTGTCTTTGGATTAAATGCTCTTGCTGGAAAATCTATAAAGTCTGGTTCTGCAGTTGGACCTTGGAACTACACCAATGCTGAATCGTTAATACGATACACAGTCAGAAAGAAGTACACCATTCATGGTTGGGAACTTGGTAATGAATTGTGTGGAAATGGAATAGGAGCAAGTGTTGCAGCAGATCAATATGCTTTTGATGTAGGTGCTTTAAGAAACATAGTTGAAAATGCATATAGAGGGTTTGAACATAATAAGCCACTAGTCATTGCACCTGGAGGCTTCTTTGACTCGGATTGGTTCAAGGAATTTATAAGCAAATCTGGTAAATCTGTAGATGTGGTCACCCACCACATTTATAACCTTGGGCCAGGAGTTGATGACCACATAACTGAAAAAATTCTTGACCCTTCCTATCTGGATGGAGAGGCTAACACATTCAGCAGCCTGAAAAGTATAGTTCAAAGTTCAGCAACCTCAGTAAAATCATGGGTTGGTGAAGCAGGAGGGGCTTACAATAGTGGCCATCACCTTGTGTCTGATGCATTTGTCTACAGCTTCTGGTATTTAGACCAACTTGGCATGTCAGCTGTTTATGACACCAGAACATACTGCAGACAAAGTTTGATAGGAGGAAACTATGGTTTGCTGAATACTAGTACTTTCATGCCAAATCCAGACTATTATAGTGCACTTCTATGGCACCGACTCATGGGAGGACGTGTCCTCTCAACTACCTTCTATGGGACAAAGAAGATAAGAACTTATGCACATTGTGCAAAGCAATCCAAAGGGATCACAATACTAGTACTCAACTTGGACAACAGCACCACTGTTGAAGTCAATGTGGCCTTAAAATTTAACAAGTTACCATACCGAAGAGTTGGTGAACCAGCAAGAAGAGAGTACCATTTAACAGCACCAGACAGGAATTTACATAGCCAAACCATGTTGCTAAATGGAAAAATTTTAAGTGTAAACTCAGCTGGTGAAATTCCTCCTTTGGATCCTCTATATGTAAACTCAAGAAAGCCAATAATAGTTGGTCCTCTATCTATTGTATTTGCTCATATACCAAATGTTCTTCTTTCGGCATGCAGCTAA

Predicted protein sequences of Glyma17g11670

Limit To All Plant Sequences

>Glyma17g11670.1   sequence type=predicted peptide   gene model=Glyma17g11670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQIRLLGLCLWMYLACLSFIGVGAVYGREGEVLEGIVLVHGKTAIGRIDDDSICATLDWWPSQKCDYGKCSWGHASLLNLDLNNKILLNAVKAFSPLKIRLGGTLQDKVIYGTEDCRQPCTPFVLNANEMFGFTQGCLPMYRWDELNSFFQKAGVKVVFGLNALAGKSIKSGSAVGPWNYTNAESLIRYTVRKKYTIHGWELGNELCGNGIGASVAADQYAFDVGALRNIVENAYRGFEHNKPLVIAPGGFFDSDWFKEFISKSGKSVDVVTHHIYNLGPGVDDHITEKILDPSYLDGEANTFSSLKSIVQSSATSVKSWVGEAGGAYNSGHHLVSDAFVYSFWYLDQLGMSAVYDTRTYCRQSLIGGNYGLLNTSTFMPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCAKQSKGITILVLNLDNSTTVEVNVALKFNKLPYRRVGEPARREYHLTAPDRNLHSQTMLLNGKILSVNSAGEIPPLDPLYVNSRKPIIVGPLSIVFAHIPNVLLSACS*

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