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Report for Sequence Feature Glyma17g11640

Feature Type:gene_model
Chromosome:Gm17
Start:8741832
stop:8744148
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01980AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:327747-328833 REVERSE LENGTH=266 SoyBaseE_val: 2.00E-116ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG0725 KOG Reductases with broad range of substrate specificities JGI ISS
PTHR24322Panther FAMILY NOT NAMED JGI ISS
PTHR24322:SF58Panther SUBFAMILY NOT NAMED JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_C6TH27UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TH27_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7I3F7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7I3F7_MEDTR SoyBaseE_val: 1.00E-150ISS

Expression Patterns of Glyma17g11640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g107900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g11640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g11640
>Glyma17g11640.1   sequence type=CDS   gene model=Glyma17g11640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGTCAGGGAAGAGAGTGTTGCTTACCTCCAACGGCGACGACATTTCTCAAGGCATTGCCTTCCATTTGGTGAAGCAAGGGTGCAGGTTGGTTTTGCTGGGAGATCAGAATTCCCTGCGGAGCATCGCGAACAAAATCATGGATTCCCTCTCCCTCGCAGACAGAGGCACCGTGCAGGTCGTTGGATTGGACATGGAGGATCAAAGCGAATCGACTTTCCATCATTCCGTGGATAAAGCGTGCCAGATTTTGGGGAAATTGGATGCGTTTGTCAACTGCTACGCTTACGAAGGAAAAATGCAAGATCATCTTGAGTTAGCTGAGAGTGAGTTCAAGAAAATAGTGAAGATTAATTTTATGGCTGCGTGGTTTCTATTAAAAGCTGTTGGGCGAAAGATGCGGGAGTTCAACACCGGGGGCTCCATCGTCTTTTTAACCTCCATAGTTGGTGCTGAAAGGGGGCTTTATCCAGGTGCTGCTGCATATGCCTCTGCCTTGGCTGGAGTGCAGCAGTTAGTTAGGGCTTCGGCTTTGGAGATAGGGAAGTACCAGGTCAGAGTTAATGCAATTTCTCGTGGCCTGCACCTGCATGATGAATTCCCATTATCCGTGGGAAAGGAAAGGGCAGAAAAATTTGTGAAGGATGCAGCACCACTTGAGAGATGGCTTGATGTTAAGAATGATCTGGCTTCTACAGTCATCTACCTAATCAGTGATGGATCACGCTACATGACTGGAACAACCATATATGTTGATGGGGCACAGTCTATAACCAGGCCTCGGATGCGATCCTTTATGTGA
Predicted protein sequences of Glyma17g11640
>Glyma17g11640.1   sequence type=predicted peptide   gene model=Glyma17g11640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKSGKRVLLTSNGDDISQGIAFHLVKQGCRLVLLGDQNSLRSIANKIMDSLSLADRGTVQVVGLDMEDQSESTFHHSVDKACQILGKLDAFVNCYAYEGKMQDHLELAESEFKKIVKINFMAAWFLLKAVGRKMREFNTGGSIVFLTSIVGAERGLYPGAAAYASALAGVQQLVRASALEIGKYQVRVNAISRGLHLHDEFPLSVGKERAEKFVKDAAPLERWLDVKNDLASTVIYLISDGSRYMTGTTIYVDGAQSITRPRMRSFM*






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