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Report for Sequence Feature Glyma17g11620

Feature Type:gene_model
Chromosome:Gm17
Start:8727712
stop:8729263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G11890AT Annotation by Michelle Graham. TAIR10: adenylate cyclases | chr2:4802999-4803631 FORWARD LENGTH=210 SoyBaseE_val: 3.00E-66ISS
GO:0006796GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process SoyBaseN/AISS
PF01928PFAM CYTH domain JGI ISS
UniRef100_E1AQY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Adenylate cyclase n=1 Tax=Ipomoea nil RepID=E1AQY2_IPONI SoyBaseE_val: 2.00E-88ISS
UniRef100_I1MU21UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU21_SOYBN SoyBaseE_val: 5.00E-141ISS

Expression Patterns of Glyma17g11620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11620 not represented in the dataset
Glyma17g11620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11620
ParalogEvidenceComments
Glyma13g23210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g107700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g11620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g11620
>Glyma17g11620.1   sequence type=CDS   gene model=Glyma17g11620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTCGAAGTCAAGCTGCGTCTCGCCGACGCCAACGCCCACCGCCACGTCACCACTCTACTCTCCCCCTTTCACGTCATCACCCACCGCCAGCAGAACCTCTTCTTCGACGGCGCCGCCTCCGAGCTCTCCGCGCGCCGCGCCGTCCTCCGCCTCCGCTTCTACGGCGACGACGAGCGCTGCGTCGCTTCGCTGAAGGCGCGGGCGGTGCTGGTGGACGGCGTGAGCCGCGTGGAGGAGGACGAGGAGGATCTGGACCCAAGCATCGGGCGCGAATGCGTGGCGGAGCCGGCGAAGTTGGGGTCGGTGGAGTCTAGGGTTTTGAAGAGGGTGCAAGAGGAATTTGGAACTGAAAAAGGATTGGTGGGGTTGGGAGGGTTTGGGAATTTGAGGAGTGTGTATGATTGGAAGGGTTTGAAATTGGAGGTGGATGAAACCAGTTTTGATTTTGGAACACTCTATGAGATCGAATGCGAGAGTTCTGATCCTGAAAGAGCTAAACGCCTCCTTGAGGAGTTCTTGAAGGAGAATGAAATCAATTATTCTTACTCCACTGCCTCCAAATTCGCCATCTTTCGATCTGGGAAACTGCCTTAG
Predicted protein sequences of Glyma17g11620
>Glyma17g11620.1   sequence type=predicted peptide   gene model=Glyma17g11620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEVKLRLADANAHRHVTTLLSPFHVITHRQQNLFFDGAASELSARRAVLRLRFYGDDERCVASLKARAVLVDGVSRVEEDEEDLDPSIGRECVAEPAKLGSVESRVLKRVQEEFGTEKGLVGLGGFGNLRSVYDWKGLKLEVDETSFDFGTLYEIECESSDPERAKRLLEEFLKENEINYSYSTASKFAIFRSGKLP*






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