Glyma17g11610 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g11610

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8724492
stop:	8726965
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_B9T253	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldose 1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9T253_RICCO	SoyBase	E_val: 1.00E-07	ISS
UniRef100_I1MU20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU20_SOYBN	SoyBase	E_val: 5.00E-120	ISS

Expression Patterns of Glyma17g11610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g107600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11610

Limit To All Plant Sequences

>Glyma17g11610.1   sequence type=CDS   gene model=Glyma17g11610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGGAGGAGCTATCTTCTCTTAGCTCGGTGGAGAGGAACATTCACATAGCCTCTGTCCTGGAAGCCATGGCGGTGGACACTATTTTCGCCGCTGCCAAATCTCTCCTTTGCTTCTCCATTCTGACTGGATCTCTGCTGACTGACATCAATCATTCAGTGTCCCCAAAATTGACCCCAATGGATGGAAGATTTGCTTTTGATGATCTCTGCAAGGGAAAACATACTTATCGTTTAAACAAGGATGCTAGTGATTCAGATGAGGACGAGGATGAAGAAGACGATCATGACACAAATGATCAGAATGATGAGGAAGGAGATGAAGACTTCTCAGGTGAAGGTGAGGAAGAGGCTGACCCTGAGGATGATCCTGAGGCCAATGGTGCAGGAGGAAGTAATGATGATGATGATAGTGATGAAGATGATGATGACGACAACGATGGTGATGATGATGGAGAAGATGAGGATGAGAAAGAGGGTGAAGACGAAGAAGATGAAGAGGAGGTTCCACAACCACCTACTAAGAAGAGGAAGTGA

Predicted protein sequences of Glyma17g11610

Limit To All Plant Sequences

>Glyma17g11610.1   sequence type=predicted peptide   gene model=Glyma17g11610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMEELSSLSSVERNIHIASVLEAMAVDTIFAAAKSLLCFSILTGSLLTDINHSVSPKLTPMDGRFAFDDLCKGKHTYRLNKDASDSDEDEDEEDDHDTNDQNDEEGDEDFSGEGEEEADPEDDPEANGAGGSNDDDDSDEDDDDDNDGDDDGEDEDEKEGEDEEDEEEVPQPPTKKRK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain