Glyma17g11600 - SoyBase

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Report for Sequence Feature Glyma17g11600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8712798
stop:	8721135
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20350	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein with DHHC zinc finger domain \| chr5:6876772-6881102 FORWARD LENGTH=620	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0000035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acyl binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016417	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-acyltransferase activity	SoyBase	N/A	ISS
KOG0509	KOG	Ankyrin repeat and DHHC-type Zn-finger domain containing proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7JGL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-acyltransferase TIP1 n=1 Tax=Medicago truncatula RepID=G7JGL7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MU18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MU18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11600

Paralog	Evidence	Comments
Glyma13g23230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g107500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11600

Limit To All Plant Sequences

>Glyma17g11600.2   sequence type=transcript   gene model=Glyma17g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTTTTTGAGGGGAAAGGGTGAACGAAGGAACGAACGAATAAAGTTAAGGGGGAATTTGAAAAGAATAAAGTGACTCCAAGTGGCGTGGCCTGCCATCATCATATGATATCTCTATCTATAGACCCATCCATCTCTTCAATTTGATTCCTTCGTTGTTTCGTCCTGAGAGGGTCAGCCATGACCCAAACCCTCTCATTCTCTCTCTCACCTTCCCAGAAAACCCTAGAAATTAATTAAAACCATCCAATCTTCTTTTCTCCATTTCCCCGATTTTTTTTTTTCATTTCTATTTCAATCGCAACCTCCTCCTCCTTCCAAGTCAACGCGGATTTCAGAATTCTCGATCCATGTCGTCCGAGATCGAGGTTGTCGAGGAGGTGCAGTCCCGCGACGAGCAATCGGGGGCGGAGGAGAGCCTCCGTAATGACGTGTACACGGCGGCGGCTTACGGGGATTTGGAGAGGCTGCAGAGATTGGTGGAGCAAGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGGTTCTTTGATCGCATGGGGGAGATGTAAATGCAACAGATCATACTGGTCAGACGGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGCTGCAGAGCTTTTACTCCAGGAGGGTGCTCGAGTGAGTGCTGCCGATATGAATGGATATCAGACAACACATGTTGCTGCACAATATGGTCAGACAGCTTTCCTTTACCACATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCCTTGCATTGGGCTGCATACAAAGGTTTTGCCGATTCTATACGTCTTCTGTTATTTCTTGATGCACACAGGGGACGTCAAGATACGGGGGGTTGCACTCCTCTTCATTGGGCTGCTATTAGGGGCAACTTGGAGGCCTGTACCGTGCTAGTACAGGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCCGTCCTTTGGTGCATAATTCTTGTGCTATTGGTTACGTATATTCATTCAGTCATCTTGGCAACAAAAATGCCAAAGCTGACAGCTGCAGCTGGCCTTCTTGCATGGTTTGGAGTTTTTCTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAGCAAGGATCCTGGTTATATCAGGATGAATATGCATGACAATCAGGATACAAAAGATGACGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAGATTGTCAGGCCTCTTCGAGCAAAACACTGTTCCACCTGTGATCGTTGTGTGGAACAATTTGATCACCATTGTCCTTGGGTATCCAATTGCATCGGCAAGAAGAACAAATGGGATTTCTTTGTTTTTCTTGTTCTTGAAGTTCTGGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAGAGTGTTAACTGATCCACTTGCACCTCATTCATTTGGGGCATGGATTCAGTATGTTGCTAACAATCACATTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGTTACCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTATCAAGAAGAACTGTTCTGATTTCTTGATCAATGGTTACAACGAAGACGTTGAGTGCATTGAAGAATTAGGTAACTCAGAGGAGGGTATAGGAATGATGCATATGGCAAGAAGCTCGAACTTGGCAAATGGAGACTCGCACACCCATACTGAATATGCAAGAGGCAATGGAAATGGCCATCATGCTATTAATGTGGATTCCAATTCCAACAGTACCAACTCCAAAATACATCATGGTCATATTAATGGTCATGTTCATTCTTCGCATTGTAGCCATAATAACCATGGCAAAACCAGAAATGACAACGTTCCCTTGGGCTTGGGTCTTGGCCTTGGACGGAACAGATCTGTTACAGCCTCATCATGATATTTACATACATGTCTGGTGTTTGAACCTAACCTGTAATGTAACATAGGCACACATCTGGGTTGGTTTACGTTAATTCAATTTATTGTGGCTCTTTTCTACCACACCCCCATGTGCAATTTTGTGCTGTTACATTTAGTCGTCCTCTTATCGTTTTTTCTTTCTACTTTTTGTAACTAATTTAAGTTGCATTTTAAAGATGATAAGCCTTGAAATCTATGTATGAAATTCGAATGTATTTGCTAGAGCCTAGAGGTCCCGCCCCCCTTCCTTCCTATGGCGGTTGCTACTTGCTAGTGTGCGGATGAAACAAATATATATATATATATATATACTGGTACAACTTATTCTTTTTAATAAATTTTCTTACATATTAAATTTTATTAA

Coding sequences of Glyma17g11600

Limit To All Plant Sequences

>Glyma17g11600.1   sequence type=CDS   gene model=Glyma17g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCCGAGATCGAGGTTGTCGAGGAGGTGCAGTCCCGCGACGAGCAATCGGGGGCGGAGGAGAGCCTCCGTAATGACGTGTACACGGCGGCGGCTTACGGGGATTTGGAGAGGCTGCAGAGATTGGTGGAGCAAGAGGGTTGCCCCGTCTCCGAGCCCGACGGTTTGGGCTACTACGCGCTTCAGTGGGCCGCACTTAACAACCGCACTGCCGCTGCTCAGTACATCATTGAGCATGGGGGAGATGTAAATGCAACAGATCATACTGGTCAGACGGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGCTGCAGAGCTTTTACTCCAGGAGGGTGCTCGAGTGAGTGCTGCCGATATGAATGGATATCAGACAACACATGTTGCTGCACAATATGGTCAGACAGCTTTCCTTTACCACATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCCTTGCATTGGGCTGCATACAAAGGTTTTGCCGATTCTATACGTCTTCTGTTATTTCTTGATGCACACAGGGGACGTCAAGATACGGGGGGTTGCACTCCTCTTCATTGGGCTGCTATTAGGGGCAACTTGGAGGCCTGTACCGTGCTAGTACAGGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCCGTCCTTTGGTGCATAATTCTTGTGCTATTGGTTACGTATATTCATTCAGTCATCTTGGCAACAAAAATGCCAAAGCTGACAGCTGCAGCTGGCCTTCTTGCATGGTTTGGAGTTTTTCTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAGCAAGGATCCTGGTTATATCAGGATGAATATGCATGACAATCAGGATACAAAAGATGACGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAGATTGTCAGGCCTCTTCGAGCAAAACACTGTTCCACCTGTGATCGTTGTGTGGAACAATTTGATCACCATTGTCCTTGGGTATCCAATTGCATCGGCAAGAAGAACAAATGGGATTTCTTTGTTTTTCTTGTTCTTGAAGTTCTGGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAGAGTGTTAACTGATCCACTTGCACCTCATTCATTTGGGGCATGGATTCAGTATGTTGCTAACAATCACATTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGTTACCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTATCAAGAAGAACTGTTCTGATTTCTTGATCAATGGTTACAACGAAGACGTTGAGTGCATTGAAGAATTAGGTAACTCAGAGGAGGGTATAGGAATGATGCATATGGCAAGAAGCTCGAACTTGGCAAATGGAGACTCGCACACCCATACTGAATATGCAAGAGGCAATGGAAATGGCCATCATGCTATTAATGTGGATTCCAATTCCAACAGTACCAACTCCAAAATACATCATGGTCATATTAATGGTCATGTTCATTCTTCGCATTGTAGCCATAATAACCATGGCAAAACCAGAAATGACAACGTTCCCTTGGGCTTGGGTCTTGGCCTTGGACGGAACAGATCTGTTACAGCCTCATCATGA

>Glyma17g11600.2   sequence type=CDS   gene model=Glyma17g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGATATCAGACAACACATGTTGCTGCACAATATGGTCAGACAGCTTTCCTTTACCACATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCCTTGCATTGGGCTGCATACAAAGGTTTTGCCGATTCTATACGTCTTCTGTTATTTCTTGATGCACACAGGGGACGTCAAGATACGGGGGGTTGCACTCCTCTTCATTGGGCTGCTATTAGGGGCAACTTGGAGGCCTGTACCGTGCTAGTACAGGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTTGGAAAGATTTCCAAATTAGGACTTGCTCCCGTCCTTTGGTGCATAATTCTTGTGCTATTGGTTACGTATATTCATTCAGTCATCTTGGCAACAAAAATGCCAAAGCTGACAGCTGCAGCTGGCCTTCTTGCATGGTTTGGAGTTTTTCTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAGCAAGGATCCTGGTTATATCAGGATGAATATGCATGACAATCAGGATACAAAAGATGACGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAGATTGTCAGGCCTCTTCGAGCAAAACACTGTTCCACCTGTGATCGTTGTGTGGAACAATTTGATCACCATTGTCCTTGGGTATCCAATTGCATCGGCAAGAAGAACAAATGGGATTTCTTTGTTTTTCTTGTTCTTGAAGTTCTGGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAGAGTGTTAACTGATCCACTTGCACCTCATTCATTTGGGGCATGGATTCAGTATGTTGCTAACAATCACATTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGTTACCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTATCAAGAAGAACTGTTCTGATTTCTTGATCAATGGTTACAACGAAGACGTTGAGTGCATTGAAGAATTAGGTAACTCAGAGGAGGGTATAGGAATGATGCATATGGCAAGAAGCTCGAACTTGGCAAATGGAGACTCGCACACCCATACTGAATATGCAAGAGGCAATGGAAATGGCCATCATGCTATTAATGTGGATTCCAATTCCAACAGTACCAACTCCAAAATACATCATGGTCATATTAATGGTCATGTTCATTCTTCGCATTGTAGCCATAATAACCATGGCAAAACCAGAAATGACAACGTTCCCTTGGGCTTGGGTCTTGGCCTTGGACGGAACAGATCTGTTACAGCCTCATCATGA

Predicted protein sequences of Glyma17g11600

Limit To All Plant Sequences

>Glyma17g11600.1   sequence type=predicted peptide   gene model=Glyma17g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSEIEVVEEVQSRDEQSGAEESLRNDVYTAAAYGDLERLQRLVEQEGCPVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNATDHTGQTALHWSAVRGAIQAAELLLQEGARVSAADMNGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADSIRLLLFLDAHRGRQDTGGCTPLHWAAIRGNLEACTVLVQAGKKEDLMLADNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSRLGKISKLGLAPVLWCIILVLLVTYIHSVILATKMPKLTAAAGLLAWFGVFLASVGLVMFYRCSSKDPGYIRMNMHDNQDTKDDEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFVFLVLEVLAMLVTGGVCLTRVLTDPLAPHSFGAWIQYVANNHIGAISFLIADFFLFFGVFTLTVVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVECIEELGNSEEGIGMMHMARSSNLANGDSHTHTEYARGNGNGHHAINVDSNSNSTNSKIHHGHINGHVHSSHCSHNNHGKTRNDNVPLGLGLGLGRNRSVTASS*

>Glyma17g11600.2   sequence type=predicted peptide   gene model=Glyma17g11600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADSIRLLLFLDAHRGRQDTGGCTPLHWAAIRGNLEACTVLVQAGKKEDLMLADNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSRLGKISKLGLAPVLWCIILVLLVTYIHSVILATKMPKLTAAAGLLAWFGVFLASVGLVMFYRCSSKDPGYIRMNMHDNQDTKDDEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFVFLVLEVLAMLVTGGVCLTRVLTDPLAPHSFGAWIQYVANNHIGAISFLIADFFLFFGVFTLTVVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVECIEELGNSEEGIGMMHMARSSNLANGDSHTHTEYARGNGNGHHAINVDSNSNSTNSKIHHGHINGHVHSSHCSHNNHGKTRNDNVPLGLGLGLGRNRSVTASS*

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