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Report for Sequence Feature Glyma17g11570

Feature Type:gene_model
Chromosome:Gm17
Start:8687380
stop:8689902
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04770AT Annotation by Michelle Graham. TAIR10: ATP binding cassette protein 1 | chr4:2427998-2429785 REVERSE LENGTH=557 SoyBaseE_val: 0ISS
GO:0000302GO-bp Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species SoyBaseN/AISS
GO:0006879GO-bp Annotation by Michelle Graham. GO Biological Process: cellular iron ion homeostasis SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:2000030GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of response to red or far red light SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042626GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances SoyBaseN/AISS
PF01458PFAM Uncharacterized protein family (UPF0051) JGI ISS
UniRef100_G7L3A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding cassette transporter subfamily I member 15 ABC component protein PpABCI15 n=1 Tax=Medicago truncatula RepID=G7L3A8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MU14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU14_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g11570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11570
ParalogEvidenceComments
Glyma13g23260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g107200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g11570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g11570
>Glyma17g11570.1   sequence type=CDS   gene model=Glyma17g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCTTCTCCGCTTCAACGGCGTCTCCCTCTTTCCCTTACCTTCCCAACCCACACGTGACCCCATCCTCCCCAAACCGTCACGCCTCGTAACGGTGCGCGCGGAGGTGAAAGAGACCTCCGCACCCGCCGCCGCCACATCCTCCGACGAAAAGATCCGCGAAATCCTCCGCAACCGTGACTACGACAAGAAATTCGGGTTCAGCGTGGAGATCGAGTCCTTGACGATCCCAAAAGGGCTCTCAAAAGAAACCATTGGTCTGATCTCGTCCCTGAAGGAGGAGCCCCACTGGATGCTCGAATTCCGCCTGAAGGCCTTGGATAAATTCCTCTCCATGAAGGAACCCACGTGGTCTGACAACACTTACCCTCCCATCGACCTCCAGAATATCTGCTACTACTCCGCCCCCAAGAATAAACCCTCTCTTCAATCCCTCGACGACGCTGACCCCGAGCTTCTCCGCTACTTCGAGAAGCTCGGCGTCCCCCTCAACGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGACGCCGTCCTCGACAGCGTCTCAATCGCCACAACGCACCGCAAAACCCTAGAAAAGGCCGGCGTTATATTCTGCTCCATCTCCGAGGCCATTAAGGAATATCCTGATTTGGTGAAAAAGTATTTGGGGAAAGTTGTCCCGTCAGACGACAACTACTACGCCGCGTTGAACGCTGCGGTCTTCAGCGACGGGTCGTTTTGCTACATTCCTAAAGACACCAAGTGTCCTATGCAGATTTCGACTTACTTCAGAATCAACGCGTTGGAGACAGGACAGTTTGAGAGGACTTTGATTGTCGCCGACGATCGGAGCTCTGTGGAGTATTTGGAAGGCTGCACCGCGCCTTCCTACGATCGGAACCAGCTCCATGCCGCGGTGGTGGAGTTGTATTGCGGCGAGGGGGCGGAGATTAAGTACTCCACGGTGCAGAATTGGTACGCTGGGGACGAAGAAGGGAAGGGTGGGGTTTACAATTTCGTGACCAAGAGAGGGTTGTGTGGTGGTGCAGGTTCGAAGATATCGTGGACGCAGGTGGAGACGGGTTCGGCGATCACGTGGAAGTACCCGAGTGTTGTGCTGGAAGGAGATGGTAGTGTTGGGGAGTTCTATTCTGTGGCTTTGACGAATAACTATCAGCAGGCGGATACCGGGACCAAGATGATACACAAAGGGAAGAACACGAGGAGTAGGATTATATCCAAAGGAATATCGGTTGGGCATTCCAGGAACTGTTATAGAGGGCTTGTTCAGGTTCTGTCCAAGGCTGACAATGCCCGAAACTCGTCACAGTGTGATTCTATGCTTATTGGTGACAATGCTGCTGCAAATACCTATCCTTATATCCAGGTGAAAAATCCAACCGCAAGAATTGAACATGAAGCTAGTACATCCAAAATTGGAGAAGATCAATTGTTTTATTTTCAACAAAGGGGAATAGACTATGAAAAGGCAATGGCTGCTATGATCTCTGGATTTTGCCGTGATGTGTTTAATGAGCTTCCTGATGAATTTGGTTCCGAAGTGAACCAACTCATGAGCTTGAAGCTTGAGGGATCAGTAGGTTAA
Predicted protein sequences of Glyma17g11570
>Glyma17g11570.1   sequence type=predicted peptide   gene model=Glyma17g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLLRFNGVSLFPLPSQPTRDPILPKPSRLVTVRAEVKETSAPAAATSSDEKIREILRNRDYDKKFGFSVEIESLTIPKGLSKETIGLISSLKEEPHWMLEFRLKALDKFLSMKEPTWSDNTYPPIDLQNICYYSAPKNKPSLQSLDDADPELLRYFEKLGVPLNEQKRLANVAVDAVLDSVSIATTHRKTLEKAGVIFCSISEAIKEYPDLVKKYLGKVVPSDDNYYAALNAAVFSDGSFCYIPKDTKCPMQISTYFRINALETGQFERTLIVADDRSSVEYLEGCTAPSYDRNQLHAAVVELYCGEGAEIKYSTVQNWYAGDEEGKGGVYNFVTKRGLCGGAGSKISWTQVETGSAITWKYPSVVLEGDGSVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISVGHSRNCYRGLVQVLSKADNARNSSQCDSMLIGDNAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG*






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