Glyma17g11560 - SoyBase

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Report for Sequence Feature Glyma17g11560

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8680547
stop:	8686889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G12550	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-associated (UBA)/TS-N domain-containing protein \| chr2:5114881-5118486 FORWARD LENGTH=562	SoyBase	E_val: 1.00E-149	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2561	KOG	Adaptor protein NUB1, contains UBA domain	JGI		ISS
PTHR12948	Panther	NEDD8 ULTIMATE BUSTER-1 (BS4 PROTEIN)	JGI		ISS
PTHR12948:SF4	Panther	UNCHARACTERIZED	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
UniRef100_B9T241	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NEDD8 ultimate buster, putative n=1 Tax=Ricinus communis RepID=B9T241_RICCO	SoyBase	E_val: 6.00E-164	ISS
UniRef100_UPI000233EC5B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC5B related cluster n=1 Tax=unknown RepID=UPI000233EC5B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g107100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11560

Limit To All Plant Sequences

>Glyma17g11560.1   sequence type=CDS   gene model=Glyma17g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATTGAAGATTGGGGGAATGTGGATCGGGATTCTAGAGGTGGAACTTGAGACATGGTCGATCCGTATGTTAAGGGAAGAGGTTGCCAAACGATCAAATTGCAACCCTAACTCTGTCAATTTGATATGCGCTGGCAAGATTCTCAAGGATGGTGATGGTCAACACAATTTGACCCAATTAGGTATCAAGAATAACGCCAAGATTCTTGCCACTCGTATCTGTGTCGAACAAGGCAAAGCTATCAAACAAGAGATCATGGCCGAGGAAGAACACTCTCACAAACTTGCTAGGGTCAAGGCAGCTGCCATTGCAGTGGCCAAAAGGCATGTAGATGATCTATTACCTATCGAAAACTTCACCACAGAAGTTGAAGGTCAAATGGGGAAGAAAATAAAATTAGCCTCCGAGACTGATCATCAGAGGGCCATAATGACGGGATTGGTGTTAGAGGCAAATGGAAAGCGTCTAATTCGACAGGGAAAGTATAAAGATGCATTAGAAGTTCTAAGCATGGCAGAGGAAACATTCTCTCTTTGTGATGATTCTGACACCCTTGAGCTTATTGACATCATTCCGATAATGCAAATAAACATGGTGTGGTGCTACTTTATGATGCAAGACATCAGTTCGTTATCAGAGGCAGGAAAACTTCTTGCAAAGGCTAGGGAAGGACTTGAAGATGCTTATGGGAAGCATGCTCTACGCGCCAGACTTTTAAAAAGTGGTTGCTTTCTAGAACTTGCATGGCATTTGAGACTGGAGCTGCTCGAAGGAGTGGTGGCCTATTATAGTGGTCAATTGGATACAGCAAGAGAAGCACTGCTTTCTGCACAAGCAAAATTTGAAAAGTTGCAAGTATCTGATGAAGATCTGTCGCTCGTAATGAGCATGGGCTTCACCAAATGTGATGCCAAGAGGGCATTGAAAATGAATCTACAAAACATTCAAGCTGCAGTCAATTTCCTGATTGAGGAAAATGCAGAAAAAGATCAAAAGCAGAAGGAAAGAGAAAGTGAAATCCGGAAGCAGAAACCTGTAGATCTACAAAGATTGAACGAGCTGGAATCTGTTGGGTTTGAGAAGGACATTGCAGCTGAAGCTCTCCGAAGAAACGGAAATGTTTTTCAGAAAGCGCTGAATGATTTGACACATCCAGAAACTTTTTCTGCTTTACAGGCTTATATCGAGTCAGAGAAAGGGAAGATAGTTGAAGAGATAAGAACTTCTGCAGCTCTTGCTGCTACTGAGGCTGACCCCAACATAATACAATTTGAAACAATGGGAGGAAGAATGACGACAGCACGTGTGAGTCGTGTGACAGACGCCAACATGCAACGTGAAGTAAATCCAAGTGGCGGTGCAAGTTCATCATCCTCTTCTTTACCACCTCAGATTAATGCTTTTGTTTGTGATCTTCAAGATCCATCTAATAAGAGTGAAGCACAAAAGAGAGATGTAGAGATGGAAGATGAACTTTCTGCAGATATAGCTGAATCATCAGATGCTTTGGCTGACTATGACATCGAAGTGGACATAGAAGGGGCAGCTATAACTGAGTACTTGTCTTTGGTGGAGACAGCAGCAGGTGGCAGAAGGAAAGAGGAAGAAGAAAACTATTCTGTTGAGTGA

Predicted protein sequences of Glyma17g11560

Limit To All Plant Sequences

>Glyma17g11560.1   sequence type=predicted peptide   gene model=Glyma17g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKLKIGGMWIGILEVELETWSIRMLREEVAKRSNCNPNSVNLICAGKILKDGDGQHNLTQLGIKNNAKILATRICVEQGKAIKQEIMAEEEHSHKLARVKAAAIAVAKRHVDDLLPIENFTTEVEGQMGKKIKLASETDHQRAIMTGLVLEANGKRLIRQGKYKDALEVLSMAEETFSLCDDSDTLELIDIIPIMQINMVWCYFMMQDISSLSEAGKLLAKAREGLEDAYGKHALRARLLKSGCFLELAWHLRLELLEGVVAYYSGQLDTAREALLSAQAKFEKLQVSDEDLSLVMSMGFTKCDAKRALKMNLQNIQAAVNFLIEENAEKDQKQKERESEIRKQKPVDLQRLNELESVGFEKDIAAEALRRNGNVFQKALNDLTHPETFSALQAYIESEKGKIVEEIRTSAALAATEADPNIIQFETMGGRMTTARVSRVTDANMQREVNPSGGASSSSSSLPPQINAFVCDLQDPSNKSEAQKRDVEMEDELSADIAESSDALADYDIEVDIEGAAITEYLSLVETAAGGRRKEEEENYSVE*

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