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Report for Sequence Feature Glyma17g11560

Feature Type:gene_model
Chromosome:Gm17
Start:8680547
stop:8686889
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G12550AT Annotation by Michelle Graham. TAIR10: ubiquitin-associated (UBA)/TS-N domain-containing protein | chr2:5114881-5118486 FORWARD LENGTH=562 SoyBaseE_val: 1.00E-149ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG2561 KOG Adaptor protein NUB1, contains UBA domain JGI ISS
PTHR12948Panther NEDD8 ULTIMATE BUSTER-1 (BS4 PROTEIN) JGI ISS
PTHR12948:SF4Panther UNCHARACTERIZED JGI ISS
PF00627PFAM UBA/TS-N domain JGI ISS
UniRef100_B9T241UniRef Annotation by Michelle Graham. Most informative UniRef hit: NEDD8 ultimate buster, putative n=1 Tax=Ricinus communis RepID=B9T241_RICCO SoyBaseE_val: 6.00E-164ISS
UniRef100_UPI000233EC5BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC5B related cluster n=1 Tax=unknown RepID=UPI000233EC5B SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g107100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g11560.1   sequence type=CDS   gene model=Glyma17g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAATTGAAGATTGGGGGAATGTGGATCGGGATTCTAGAGGTGGAACTTGAGACATGGTCGATCCGTATGTTAAGGGAAGAGGTTGCCAAACGATCAAATTGCAACCCTAACTCTGTCAATTTGATATGCGCTGGCAAGATTCTCAAGGATGGTGATGGTCAACACAATTTGACCCAATTAGGTATCAAGAATAACGCCAAGATTCTTGCCACTCGTATCTGTGTCGAACAAGGCAAAGCTATCAAACAAGAGATCATGGCCGAGGAAGAACACTCTCACAAACTTGCTAGGGTCAAGGCAGCTGCCATTGCAGTGGCCAAAAGGCATGTAGATGATCTATTACCTATCGAAAACTTCACCACAGAAGTTGAAGGTCAAATGGGGAAGAAAATAAAATTAGCCTCCGAGACTGATCATCAGAGGGCCATAATGACGGGATTGGTGTTAGAGGCAAATGGAAAGCGTCTAATTCGACAGGGAAAGTATAAAGATGCATTAGAAGTTCTAAGCATGGCAGAGGAAACATTCTCTCTTTGTGATGATTCTGACACCCTTGAGCTTATTGACATCATTCCGATAATGCAAATAAACATGGTGTGGTGCTACTTTATGATGCAAGACATCAGTTCGTTATCAGAGGCAGGAAAACTTCTTGCAAAGGCTAGGGAAGGACTTGAAGATGCTTATGGGAAGCATGCTCTACGCGCCAGACTTTTAAAAAGTGGTTGCTTTCTAGAACTTGCATGGCATTTGAGACTGGAGCTGCTCGAAGGAGTGGTGGCCTATTATAGTGGTCAATTGGATACAGCAAGAGAAGCACTGCTTTCTGCACAAGCAAAATTTGAAAAGTTGCAAGTATCTGATGAAGATCTGTCGCTCGTAATGAGCATGGGCTTCACCAAATGTGATGCCAAGAGGGCATTGAAAATGAATCTACAAAACATTCAAGCTGCAGTCAATTTCCTGATTGAGGAAAATGCAGAAAAAGATCAAAAGCAGAAGGAAAGAGAAAGTGAAATCCGGAAGCAGAAACCTGTAGATCTACAAAGATTGAACGAGCTGGAATCTGTTGGGTTTGAGAAGGACATTGCAGCTGAAGCTCTCCGAAGAAACGGAAATGTTTTTCAGAAAGCGCTGAATGATTTGACACATCCAGAAACTTTTTCTGCTTTACAGGCTTATATCGAGTCAGAGAAAGGGAAGATAGTTGAAGAGATAAGAACTTCTGCAGCTCTTGCTGCTACTGAGGCTGACCCCAACATAATACAATTTGAAACAATGGGAGGAAGAATGACGACAGCACGTGTGAGTCGTGTGACAGACGCCAACATGCAACGTGAAGTAAATCCAAGTGGCGGTGCAAGTTCATCATCCTCTTCTTTACCACCTCAGATTAATGCTTTTGTTTGTGATCTTCAAGATCCATCTAATAAGAGTGAAGCACAAAAGAGAGATGTAGAGATGGAAGATGAACTTTCTGCAGATATAGCTGAATCATCAGATGCTTTGGCTGACTATGACATCGAAGTGGACATAGAAGGGGCAGCTATAACTGAGTACTTGTCTTTGGTGGAGACAGCAGCAGGTGGCAGAAGGAAAGAGGAAGAAGAAAACTATTCTGTTGAGTGA

>Glyma17g11560.1   sequence type=predicted peptide   gene model=Glyma17g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKLKIGGMWIGILEVELETWSIRMLREEVAKRSNCNPNSVNLICAGKILKDGDGQHNLTQLGIKNNAKILATRICVEQGKAIKQEIMAEEEHSHKLARVKAAAIAVAKRHVDDLLPIENFTTEVEGQMGKKIKLASETDHQRAIMTGLVLEANGKRLIRQGKYKDALEVLSMAEETFSLCDDSDTLELIDIIPIMQINMVWCYFMMQDISSLSEAGKLLAKAREGLEDAYGKHALRARLLKSGCFLELAWHLRLELLEGVVAYYSGQLDTAREALLSAQAKFEKLQVSDEDLSLVMSMGFTKCDAKRALKMNLQNIQAAVNFLIEENAEKDQKQKERESEIRKQKPVDLQRLNELESVGFEKDIAAEALRRNGNVFQKALNDLTHPETFSALQAYIESEKGKIVEEIRTSAALAATEADPNIIQFETMGGRMTTARVSRVTDANMQREVNPSGGASSSSSSLPPQINAFVCDLQDPSNKSEAQKRDVEMEDELSADIAESSDALADYDIEVDIEGAAITEYLSLVETAAGGRRKEEEENYSVE*







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