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Report for Sequence Feature Glyma17g11545

Feature Type:gene_model
Chromosome:Gm17
Start:8672564
stop:8676153
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11545
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32060AT Annotation by Michelle Graham. TAIR10: calcium-binding EF hand family protein | chr4:15501134-15503302 FORWARD LENGTH=454 SoyBaseE_val: 2.00E-92ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR12294Panther EF HAND DOMAIN FAMILY A1,A2-RELATED JGI ISS
PTHR12294:SF1Panther gb def: cg4704 gene product [drosophila melanogaster] JGI ISS
UniRef100_B9SZM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SZM7_RICCO SoyBaseE_val: 7.00E-101ISS
UniRef100_UPI000233EC58UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EC58 related cluster n=1 Tax=unknown RepID=UPI000233EC58 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g11545
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11545 not represented in the dataset
Glyma17g11545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11545 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g11545
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g11545
>Glyma17g11545.1   sequence type=CDS   gene model=Glyma17g11545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTGGGGCAGAAGATTCCAACTCTCTCTACGGCATAGCATAAGGCCGTTTGGCAGCCAATCACAAGCCTCCACGTCATCATCATCTTCTTCTTCTTTCAGCTCCTTTGGTGGGTCCGGACATGGTGACAAGAGGGTCAGAGACTTTGAGGTCTTTCTTAGATCAATCACTTCTGGGGTTGTGATTGTTAGCTCCACCTTAGGCTATTGGTATTGGTCATCTTTGTCTTCTCCTGGTGCCAATTCTCTTCAGTCATTTGCTGATGATGATTATGCTAACGAGGAGGATCAGCTCCAACAAAACGATGAAAACAAACCCAAGTTCCTCTTCAATGATGGCTATAGAAGAAGAGTATTCTTCAATTATGAAAAACGAATTCGCTTGCAGAGCCCCCCTGAAAAGGTTTTCCAGTACTTTGCCTCTGTTCGATCCCCTAGTGGTGAGGTTTTTATGACACCTGCCGATTTGATGCGTGCCATTGTTCCTGTCTTTCCTCCTTCTGAATCAAATCGTGTTAGAGAGGGTTTCCTAAGAGGGGAACTGGTTCCTGGCGAGTTGCAGTGTGAACCTTCAAAAAATTTTATGCTCTTTGACACTAACAATGATGGACTCATTTCCTTTGTTGAGTACATCTTTTTTGTTACTCTCCTCAGCATACCAGAGTCCAGTTTTTCAGTGGCTTTTAAAATGTTTGATATTGACAACAACGGGGAAATAGTAAAGCAAGAATTCAAGAAAATGATGGCCTTGATGAGATCACAAAACAGACAAGGGGCTAATCACAGAGATGGACGACGCCTTGGCGTTACAGCTTCTATAGAAAATGGGGGTCTCTTGGAGTATTTTTTGGCAAAGAAGGAAATAAATGCTTACAGCATGAAAGATTTGTTCAATTCTTAA
Predicted protein sequences of Glyma17g11545
>Glyma17g11545.1   sequence type=predicted peptide   gene model=Glyma17g11545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSWGRRFQLSLRHSIRPFGSQSQASTSSSSSSSFSSFGGSGHGDKRVRDFEVFLRSITSGVVIVSSTLGYWYWSSLSSPGANSLQSFADDDYANEEDQLQQNDENKPKFLFNDGYRRRVFFNYEKRIRLQSPPEKVFQYFASVRSPSGEVFMTPADLMRAIVPVFPPSESNRVREGFLRGELVPGELQCEPSKNFMLFDTNNDGLISFVEYIFFVTLLSIPESSFSVAFKMFDIDNNGEIVKQEFKKMMALMRSQNRQGANHRDGRRLGVTASIENGGLLEYFLAKKEINAYSMKDLFNS*






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