Report for Sequence Feature Glyma17g11530
Feature Type: gene_model
Chromosome: Gm17
Start: 8669162
stop: 8670363
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g11530
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G12462 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:5050583-5051585 REVERSE LENGTH=249
SoyBase E_val: 2.00E-37 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1MU11 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU11_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8H6R4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Jp18 n=1 Tax=Citrus trifoliata RepID=Q8H6R4_PONTR
SoyBase E_val: 1.00E-30 ISS
Expression Patterns of Glyma17g11530
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g11530
Paralog Evidence Comments
Glyma13g23290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g11530 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g106900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g11530
Coding sequences of Glyma17g11530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g11530.1 sequence type=CDS gene model=Glyma17g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCACTTCAAACCTTAGCATATCCTACCATATTGGCACAACCCCATCATCATCATCATCATCCATGGACTGGTTCTCTTGGCTATCCAGAACCACTCTTGAACCTTCCTTAATCTACGACTATGGCCTCACCTTTGCCCGCAACGAGCTCCAATTGGAAGATGCTTGCTACTTCAACCACGAGTTTCTTCAGAGCATGGGAATCTCAATTGCCAAGCACAGGCTAGAGATTCTCAAGCTTGTGAAGAAACAAGAAGGAGGAGGAGCAGCACGGCCCAATAAGAAGCTCTCTGGGGTCATCAAAAAGTGCCTAAGGAAGTGCATGAACAAGTTTGTTGTTTCTCATGATCATCATGCAGTCAAACACATGCCATGCTCCATGGTGAATGTGTCAGTGCCGCCACCACTACCACCACCACCACATGAGATTAGTTGGTACCATCAAGGGAAATTAAAAGGGTCACTTGTGAGGAAGCAACAACAAGGGAGTGAGGAACTTAAGGAAGAAAAAAAAGAGAAGCCTTTCCCTGTGCCTCCTATATATAGAAGCAGAACCATAGCACTTTCAGGACCTTTGGAATATGGTGGTAGAATGCATCATGAGAAAATGGTCCACAGCAGGGCCTTGAAGCTATCTGGACCACTTGATGGAAGAATGCATGAGAGAATGATGATGATGAATAGTACTAATAGTAGAACCCCTTTAATGCCTGGGCCTTTGGATGCAAGATTTGTGGCCACAACTAAGAGTCCAAGAGTGTCTGGGCCTCTGGATCCAAGAGTGTTGGTTGAGAATAGAAGCCCGAGACTGCCACGGCCTTCGGATGCAGCAAGGGCTGAAACTGAGAGCCCAATGGGTTACAGTCCTTATAACAAGCCCAAAGCTGATTTTGATTTTGATGATGATGATCACACCCTCTGGCCTTCACTGTTCCAAGATCTCAAACCAACTTGA
Predicted protein sequences of Glyma17g11530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g11530.1 sequence type=predicted peptide gene model=Glyma17g11530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTTSNLSISYHIGTTPSSSSSSMDWFSWLSRTTLEPSLIYDYGLTFARNELQLEDACYFNHEFLQSMGISIAKHRLEILKLVKKQEGGGAARPNKKLSGVIKKCLRKCMNKFVVSHDHHAVKHMPCSMVNVSVPPPLPPPPHEISWYHQGKLKGSLVRKQQQGSEELKEEKKEKPFPVPPIYRSRTIALSGPLEYGGRMHHEKMVHSRALKLSGPLDGRMHERMMMMNSTNSRTPLMPGPLDARFVATTKSPRVSGPLDPRVLVENRSPRLPRPSDAARAETESPMGYSPYNKPKADFDFDDDDHTLWPSLFQDLKPT*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
