Glyma17g11520 - SoyBase

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Report for Sequence Feature Glyma17g11520

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8665418
stop:	8668995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80530	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:30278224-30280247 REVERSE LENGTH=561	SoyBase	E_val: 0	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21576	Panther	UNCHARACTERIZED NODULIN-LIKE PROTEIN	JGI		ISS
PTHR21576:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06813	PFAM	Nodulin-like	JGI		ISS
UniRef100_I1MU10	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU10_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8H6R3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-like protein n=1 Tax=Citrus trifoliata RepID=Q8H6R3_PONTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11520

Paralog	Evidence	Comments
Glyma13g23300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g106800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11520

Limit To All Plant Sequences

>Glyma17g11520.1   sequence type=CDS   gene model=Glyma17g11520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGAGTGAAGGGAGGGAAGAGACCACCTTGGGTGGGACTTGGAGCTGCAGTGTGGGTTCAGATTGCTTCAGGAAATGGTTACTGTTTCCCTCTCTATTCCCATTCCTTGAAATCCGTTTTGGGTTTCAACCAGAGCCAGATTACCCTTCTTGGTGTTGCCAATGATATTGGTGAGAATGTTGGCATTCTTCCCGGACTCGCCTGCAACAAGTTTCCTCCTTGGCTCATTCTCTTCATCGGTGCTCTCTTTTCTTTCCTTGGTTTTGGTGTTCTCTGGCTTGCTATCACCAAAACACTTGATTCTCTTCCTTTCATCTTGCTATGGTTTGCACTTGCTGTTGCTACCAACAGTTGTGCATGGTTATCTACTGCTATTCTTGTCACCAACATGAGAAATTTCCCTGTCAGTAGAGGCACAGTTGCAGGAATCCTGAAAGGTTATTCGGGACTCAGTGCTGCAGTTTTTACTCAAATTTACAGCGTGGTTTTTCACAATTCTTCATCCAAGTTCCTTTTGTTTCTTGCCATTGGTATTCCTGCTTTATGCTTCAGTACCATGTTTCTTGTTCGGCCTTGTACTCCTGCTTCTGGTGATGATTCTGCTGAAAAGGGGCATTTTTTGTTTATCCAAGGTGCTAGTGTGGCCATGGGTTTATATATTCTTGCTACAACTCTACTTGACAACTTTATCCACATAAGGGACAGTGTTTCATATGCTTTGTTGGCTGTGATGATTCTTCTTCTCTTGGCTCCACTTGTTATCCCTATAAAGATGACACTGTGTCCCAGAAAAGCCTCTAGCACAGAAATTCCTGAGGAACATGTTGGATCTACAGACTATTTGGTTCAAGATGGCAAAGACAACGTAGAGCCATTGCTATCATCTTCATCAGCTAGTGGTCTTGGAAGTTTTAATGATGTGGTGGATGGTTCAGCTGAGGTGGCTATGCTTCTTGCTGAGGGTGAGGGAGCAGTGAGGAAGAAGAGAAGGCCCAAAAGAGGGGAAGATTTTAAGTTTACTGAGGCTCTAGTTAAGGCAGATTACTGGTTACTATTTTTTGTTTACTTTGTTGGTGTTGGAACTGGGGTTACTGTACTTAATAATTTGGCTCAAATAGGCATTGCACAAGGTATGGAAGATACCACAATCTTGCTGTCACTTTTCAGTTTTTTCAATTTTGTGGGTCGGCTTGGTGGAGGAGTTGTTTCAGAATATTTTGTCAGGACAAAAACGATTCCAAGGACAATTTGGATGACATGCACGCAGATAATTATGATCTTCTTGTACCTTGTGTTTGCCTATGCTATCAAAGGAACCCTTTATCCTGCAATTGCAGTTCTTGGTATCTGCTACGGCGTGCAATTTTCCATAGTGATTCCCACTGTTTCGGAGCTTTTTGGTTTGAAAGACTTCGGTCTATTGAGCAACTTCATGGCTTTGGGGAACCCACTTGGTGCATTTCTTTTCTCTGCTCTTCTAGCAGGACATATATACGACAATGAGGCAGCAAAACAACACGGTGTAGGCCTCATTGCTTCAAGTGTTGCATGCATGGGTCCAAATTGTTTCAAGCTAACTTTTTTTACTCTGGCTGGTGTCTGTATTGCGGGAACCATCTCCAGCATTATCTTGACTATTAGAATTAAGCCCGTGTACCAAATGCTTTATGCTGGGGGTTCTTTTAAGCTACCTCAAACTTCAGGCCACTAA

Predicted protein sequences of Glyma17g11520

Limit To All Plant Sequences

>Glyma17g11520.1   sequence type=predicted peptide   gene model=Glyma17g11520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRVKGGKRPPWVGLGAAVWVQIASGNGYCFPLYSHSLKSVLGFNQSQITLLGVANDIGENVGILPGLACNKFPPWLILFIGALFSFLGFGVLWLAITKTLDSLPFILLWFALAVATNSCAWLSTAILVTNMRNFPVSRGTVAGILKGYSGLSAAVFTQIYSVVFHNSSSKFLLFLAIGIPALCFSTMFLVRPCTPASGDDSAEKGHFLFIQGASVAMGLYILATTLLDNFIHIRDSVSYALLAVMILLLLAPLVIPIKMTLCPRKASSTEIPEEHVGSTDYLVQDGKDNVEPLLSSSSASGLGSFNDVVDGSAEVAMLLAEGEGAVRKKRRPKRGEDFKFTEALVKADYWLLFFVYFVGVGTGVTVLNNLAQIGIAQGMEDTTILLSLFSFFNFVGRLGGGVVSEYFVRTKTIPRTIWMTCTQIIMIFLYLVFAYAIKGTLYPAIAVLGICYGVQFSIVIPTVSELFGLKDFGLLSNFMALGNPLGAFLFSALLAGHIYDNEAAKQHGVGLIASSVACMGPNCFKLTFFTLAGVCIAGTISSIILTIRIKPVYQMLYAGGSFKLPQTSGH*

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