Glyma17g11480 - SoyBase

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Report for Sequence Feature Glyma17g11480

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8624814
stop:	8627056
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G12400	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr2:5005144-5008140 REVERSE LENGTH=541	SoyBase	E_val: 2.00E-140	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7JGM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7JGM7_MEDTR	SoyBase	E_val: 2.00E-131	ISS
UniRef100_UPI000233EC56	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC56 related cluster n=1 Tax=unknown RepID=UPI000233EC56	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11480

Paralog	Evidence	Comments
Glyma13g23350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g106400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11480

Limit To All Plant Sequences

>Glyma17g11480.1   sequence type=CDS   gene model=Glyma17g11480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTGCGGTTCCTTTTCTTTCCGTGGCTGTAGCCTGGTTCGTGATTTTTGGAATTTTTTTACTTATCATCTTAGCGTGTTGCTGCTGTTGTAACGGAGGAGATTCAAGTGATGATGGCTATTCTAAAGCACTCCATCATTTGTCCTTGACTTTGCTTATCTTCTGCACCATTGCGGCAATAGGTGGATGCGCTGTCCTGTACTCTGGTCAGGGGAAGTTTCGTGAAAGCACTTCGAACACACTTGATTACGTTGTGAATCAGGCTCAATTAGTAGCCGAAAACCTCCGGAACGTGACAAGTTATTTTGATTCAGCTAAGCAGCTTGTGAATGGGATTCCTCTGCCACTTGATCTTGGATCCAACATTGATGATGCCGCCAAAGTGAGAGTCATCACTGCTACTGATTCTCTCTCCAAAAAGGCTAAAGAAAATTCGAGGATGATACATAAAGTCATAGATGGAGTGAGACTGGCTCTTGTTATTGTTGCTGCTGTTATGATCTTTGTTGCATTGCTCGGATTGCTATTTTCTTTACTTGCTTTGCCGTGTCCTGTATACTCCTTAGTGGTTATTGGATGGATTCTTGTTACGGGCACCTTGTTACTTTGTGCTGCATTTCTTTTTAAGACTTACTTGAATATTAATGCGTATATATATATATATAACCCCACTGCCCACACTGCCTTGGACGACATTCTTCCATGCGTGGAAAATGCAACTGCCATGAAAACCCTTCTACGAAGCAAGACTCTCACATATACCATTGTTGACGCATTTGACCAAATCATTTCCAATTTCACAAATGCAAATACCACAGCTATTTTCAATCAATCAGGTCCCCTCGTCCCTCTTCTCTGCAATCCATATAATGCCGACTTCACCTCTCGCCAGTGTGCGCCAGGGGAAGTCACATTCAAAAACGCCATCGAGGTGTGGAAGAATTATACGTGCCAGGCTTCATCATCTGAACAATGTACGAATGAAGGTCGTTTGACACCGAAGATATACAACAAACTTGCATCTGCAGTGAATGTGACGGATGGTTTATTTCATTATGGGCCATTTTTCGTTGATTTAGTAGATTGCACTTTTGCACGTAAAGCATTCTCAGAGATTAGCAACAACTATTGTCCTTCTCTGCGGAGATATACTGAAAGAGTTTATTTGGGAACGGTTGTGGTATCTGCGGCCGTAATGCTCTCTTTGATATTTTGGATCGTCTTTTTCAGAGAGCAGTGGCGGCGTCTTCGCAACTGA

Predicted protein sequences of Glyma17g11480

Limit To All Plant Sequences

>Glyma17g11480.1   sequence type=predicted peptide   gene model=Glyma17g11480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTAVPFLSVAVAWFVIFGIFLLIILACCCCCNGGDSSDDGYSKALHHLSLTLLIFCTIAAIGGCAVLYSGQGKFRESTSNTLDYVVNQAQLVAENLRNVTSYFDSAKQLVNGIPLPLDLGSNIDDAAKVRVITATDSLSKKAKENSRMIHKVIDGVRLALVIVAAVMIFVALLGLLFSLLALPCPVYSLVVIGWILVTGTLLLCAAFLFKTYLNINAYIYIYNPTAHTALDDILPCVENATAMKTLLRSKTLTYTIVDAFDQIISNFTNANTTAIFNQSGPLVPLLCNPYNADFTSRQCAPGEVTFKNAIEVWKNYTCQASSSEQCTNEGRLTPKIYNKLASAVNVTDGLFHYGPFFVDLVDCTFARKAFSEISNNYCPSLRRYTERVYLGTVVVSAAVMLSLIFWIVFFREQWRRLRN*

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