SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06220 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987 | SoyBase | E_val: 0 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0045694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016607 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0008135 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding | SoyBase | N/A | ISS |
| KOG0468 | KOG | U5 snRNP-specific protein | JGI | ISS | |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF5 | Panther | 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT | JGI | ISS | |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF00679 | PFAM | Elongation factor G C-terminus | JGI | ISS | |
| PF03144 | PFAM | Elongation factor Tu domain 2 | JGI | ISS | |
| PF03764 | PFAM | Elongation factor G, domain IV | JGI | ISS | |
| UniRef100_G7JHS5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Medicago truncatula RepID=G7JHS5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MTZ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTZ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g11410 not represented in the dataset |
Glyma17g11410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g23420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g105700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11410.1 sequence type=CDS gene model=Glyma17g11410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGACAGCTTGTACGACGAGTTCGGCAACTACATCGGCCCCGAGATCGAGTCCGACCAGGACTCCGACCGCGACTCCGACGCCGATGCCGACGACAACCCCGACGACCAATCCGACGGCGGAGGCACCGCCCACTCCGACGGCGAGGGCCCGAGCAACGGGTGGATGACGACAATCTCCGACGAGCTGGAGAACCAGGTTGTGTTAGCAGAGGACAAAAAGTACTACCCCACCGCAGAAGAGGTGTACGGCGAGGACGTGGAAACCTTAGTCATGGACGAAGACGAACAGCCCCTGGAGCAACCTATCATAAAGCCCGTGAGAAACATAAAATTCGAAGTGGGCGTCAAGGACTCCTCCACCTACGTGTCCTCTCAGTTCCTCCTGGGTCTCATGTCAAACCCTACTTTGGTTCGCAATGTGGCGCTGGTGGGGAACTTGCAGCACGGAAAGACGGTGTTCATGGACATGCTCGTGGAGCAGACGCACCACATGTCCACGTTTGATTCACAGAGTGAGAAGCACATGCGGTATACTGATACCAGAATTGATGAACAGGAGAGGAGGATTTCGATCAAGGCCATTCCCATGTCGCTCGTGCTCGAGGATAGCAATTCCAAGTCCTATTTGTGTAACATCATGGACACGCCTGGACATGTTAATTTCTCCGACGAGATGACCGCGGCGTTGCGGCTTGCTGATGGCGCTGTCTTGATTGTAGATGCTGCTGAAGGAGTCATGGTAAACACGGAGAGGGCGATACGTCACGCAATTCAGGAGCGGTTGCCGATTGTTGTTGTAATTAATAAGGTTGACAGGCTTATAACTGAGCTTAAGTTGCCGCCAAAGGATGCTTATCATAAACTAAGGCATACTTTGGAAGTTATTAATACTCATATATCTGCTGCCTCCTCGATTGCTGGTGGTGTTCAAGTTGTGGATCCAGTTGCTGGAAATGTTTGTTTTGCTAGTGCTACTGCTGGATGGTCCTTTACATTGCAGTCGTTTGCTAAGTTGTATGGGAAGCTGCATGGAATTCCTTTGGAGGCTAATAAATTTGCTTCTCGGCTTTGGGGAGATTATTATTTTCATCCGGATACCAGAACCTTCAAAAAGAAACCCCCTGCCAGTGGAGGGGAACGATCTTTTGTGGAGTTTGTGCTGGAGCCACTTTACAAGATATATAGCCAGGTGATCGGGGAACATAAAAAGAGTGTAGAGACAACACTTGCTGAACTTGGAGTCACTCTAAGTAATGCAGCCTACAGATTAAATGTTAGGCCTTTGCTAAGGTTGGCTTGTAGCTCAGTTTTTGGTCCAGCTTCGGGTTTCACCGATATGCTTGTTCAGCATATACCTTCTCCGAGGGATGCTGCAATTAAGAAAGTTGATCATATATATACTGGTCCTAAAGACTCTTCTATTTACAAAGCCATGGCACAGTGTGATTCTTATGGCCCCCTAATGGTTAATGTGACCAAATTGTATCCCAAATCCGATTGCAGTGTGTTTGATGCCTTTGGTAGAGTTTATAGTGGTAAGATACAGACAGGACAGGCTGTACGTGTTCTAGGAGAAGGATACTCGCCGGATGATGAGGAGGACATGACTGTAAAAGAAGTAACTAAGTTGTGGGTGTATCAAGCTCGTGATAGGATGCCAGTAGCTGAGGCTCCTCCCGGTTCTTGGGTTCTAATTGAAGGTGTGGATGCTTCAATCATGAAAACTTCTACTCTTTGTAATGTGGATTATGATGAAGATGTATATATATTCCGCCCTCTTCAGTTCAATACACTGTCAGTGGTAAAAACAGCTACTGAGCCATTAAATCCAAGTGAGTTGCCAAAAATGGTGGAGGGCCTGAGGAAAATAAGCAAGAGTTATCCTCTTGCAGTTACTAAAGTCGAGGAATCTGGGGAGCACACTATTTTAGGGACTGGTGAGCTGTACTTGGATTCAATTATGAAGGACCTGAGAGAGCTCTATTCCGAAGTAGAAGTCAAGGTAGCAGATCCTGTTGTATCATTTTGTGAAACTGTTGTTGAATCTTCCTCAATGAAATGTTTTGCCGAAACACCAAACAAGAAGAATAAAATAACTATGATTGCCGAGCCGCTAGAAAGAGGTCTTGCAGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAGTAAAAAGAAACTAGGTGAATTTTTCCAGACTAAATATGACTGGGATCTTCTTGCTGCACGGTCAATCTGGGCATTTGGCCCTGATAAGCAGGGTCCCAATATTCTGTTAGATGACACCCTTCCAACTGAAGTTAACAAGGATCTGATGAATGCCGTGAAGGATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAAGGGCCTCTCTGTGATGAGCCCATCAGAAATGTTAAATTCAAGATTGTTGATGCAAAGATTGCTAATGAGTCACTCCATCGGGGGTCTGGCCAGATCATTCCAACAGCACGACGAGTGGCCTATTCAGCTTTCCTCATGGCTACTCCTCGGCTCATGGAACCAGTATATTATGTGGAGATTCAAACACCAATAGATTGTGTGTCTGCAATTTACACTGTATTATCTCGAAGGCGTGGGCATGTTACTGCTGATGTTCCTCAGCCCGGCACCCCAGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGATTTGAAACAGACTTGAGATATCATACGCAAGGTCAAGCATTTTGCATGTCAGTTTTTGATCATTGGGCTATTGTTCCCGGAGATCCTCTGGATAAAAGCATTGTTTTGCGCCCACTTGAACCAGCACCTATACAGCATCTTGCCCGTGAGTTTATGGTGAAGACAAGACGTAGAAAGGGAATGAGTGAGGATGTGAGCATAAATAAGTTCTTCGATGAGGCTATGATGGTTGAACTGGCACAGCAGGCAGCAGACCTTCATCAACAAATGATGTGA
>Glyma17g11410.1 sequence type=predicted peptide gene model=Glyma17g11410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDSLYDEFGNYIGPEIESDQDSDRDSDADADDNPDDQSDGGGTAHSDGEGPSNGWMTTISDELENQVVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDSSTYVSSQFLLGLMSNPTLVRNVALVGNLQHGKTVFMDMLVEQTHHMSTFDSQSEKHMRYTDTRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVINTHISAASSIAGGVQVVDPVAGNVCFASATAGWSFTLQSFAKLYGKLHGIPLEANKFASRLWGDYYFHPDTRTFKKKPPASGGERSFVEFVLEPLYKIYSQVIGEHKKSVETTLAELGVTLSNAAYRLNVRPLLRLACSSVFGPASGFTDMLVQHIPSPRDAAIKKVDHIYTGPKDSSIYKAMAQCDSYGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQAVRVLGEGYSPDDEEDMTVKEVTKLWVYQARDRMPVAEAPPGSWVLIEGVDASIMKTSTLCNVDYDEDVYIFRPLQFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSTDWSKKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVNKDLMNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDAKIANESLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCMSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMVELAQQAADLHQQMM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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