Glyma17g11330 - SoyBase

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Report for Sequence Feature Glyma17g11330

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8508938
stop:	8516779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25220	AT	Annotation by Michelle Graham. TAIR10: KNOTTED1-like homeobox gene 3 \| chr5:8736208-8738115 FORWARD LENGTH=431	SoyBase	E_val: 8.00E-164	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009722	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of cytokinin stimulus	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0071345	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to cytokine stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF15	Panther	HOMEOBOX PROTEIN KNOTTED-1	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF03789	PFAM	ELK domain	JGI		ISS
PF03790	PFAM	KNOX1 domain	JGI		ISS
PF03791	PFAM	KNOX2 domain	JGI		ISS
UniRef100_G7JHU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein knotted-1-like protein n=1 Tax=Medicago truncatula RepID=G7JHU3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MTZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11330

Paralog	Evidence	Comments
Glyma13g22530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g104800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11330

Limit To All Plant Sequences

>Glyma17g11330.2   sequence type=transcript   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCACTCCCCCACTCATCTCCTGCAACAACAAACAAACAAACACCACCAACAACAACCACTCCTCTTCTTTTTCACCCTCGAATCCACGCTTCCTTTACACCGCGTTTGGATCTCCGTTAAACAAAACCATTAAAATGTAGCGAGAGAAAAACAAAACCGCAAAAGAAAATCAGTTAATTTATTAATTTTATTTTTTTATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTTGAACAAAAATTATTGGTATTGTTCTCCCTTTTAATGCATGCTCGTGGGATTCATAGATCTTACGGTCCAGCGTGAACGTGATGGATTCTGGATGAAAAAGGGAAATTCATGATATATAAAACCACTGTATTGGTTGAATTACAGAAAATTATCCCTGGTATTGTTGTATATGAGGCTGCTGCATGCCGCTTGATATCTGATATTGATGCAGTCGCATTCTATTCGATTTAATGGGTAGCATGCTGATATTATTCTGCTTATTTAAAAATATTATGGATCCAATTAGTATAACTCAGTGGATAATGCATCTAACTTGTTGGAATTGGACCTG

>Glyma17g11330.3   sequence type=transcript   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGATCTCGATCCCTGCGTCAACCTGTCCAAAAAGTCTTTCCTTAAAAAGTGCTTTTCCAAACTTCTTCTTCCCTTCTTCCCTTCTCTCTCTCACTCCCCCACTCATCTCCTGCAACAACAAACAAACAAACACCACCAACAACAACCACTCCTCTTCTTTTTCACCCTCGAATCCACGCTTCCTTTACACCGCGTTTGGATCTCCGTTAAACAAAACCATTAAAATGTAGCGAGAGAAAAACAAAACCGCAAAAGAAAATCAGTTAATTTATTAATTTTATTTTTTTATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGAACGGTCGCATATTTTGAACAAAAATTATTGGTATTGTTCTCCCTTTTAATGCATGCTCGTGGGATTCATAGATCTTACGGTCCAGCGTGAACGTGATGGATTCTGGATGAAAAAGGGAAATTCATGATATATAAAACCACTGTATTGGTTGAATTACAGAAAATTATCCCTGGTATTGTTGTATATGAGGCTGCTGCATGCCGCTTGATATCTGATATTGATGCAGTCGCATTCTATTCGATTTAATGGGTAGCATGCTGATATTATTCTGCTTATTTAAAAATATTATGGATCCAATTAGTATAACTCAGTGGATAATGCATCTAACTTGTTGGAATTGGACCTGAATTTGATCGAGCATATTCTTGATGAAAGA

Coding sequences of Glyma17g11330

Limit To All Plant Sequences

>Glyma17g11330.1   sequence type=CDS   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGA

>Glyma17g11330.2   sequence type=CDS   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGGAGAAGCCAGTAA

>Glyma17g11330.3   sequence type=CDS   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGA

Predicted protein sequences of Glyma17g11330

Limit To All Plant Sequences

>Glyma17g11330.1   sequence type=predicted peptide   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHDHLQHEIAFQRFTEEQELTENRDMQQRLPPPTWLNNVNARQQNFLDTEKSVDRNNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSSAGEASNQSFM*

>Glyma17g11330.2   sequence type=predicted peptide   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHDHLQHEIAFQRFTEEQELTENRDMQQRLPPPTWLNNVNARQQNFLDTEKSVDRNNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKRRSQ*

>Glyma17g11330.3   sequence type=predicted peptide   gene model=Glyma17g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHDHLQHEIAFQRFTEEQELTENRDMQQRLPPPTWLNNVNARQQNFLDTEKSVDRNNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSAGEASNQSFM*

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