SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09850 | AT | Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein | chr3:3023397-3025742 REVERSE LENGTH=781 | SoyBase | E_val: 3.00E-164 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG2184 | KOG | Tuftelin-interacting protein TIP39, contains G-patch domain | JGI | ISS | |
| PTHR23329 | Panther | TUFTELIN-INTERACTING PROTEIN 11-RELATED | JGI | ISS | |
| PF01585 | PFAM | G-patch domain | JGI | ISS | |
| UniRef100_G7JHT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH-type with G patch domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JHT7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZN2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZN2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g11301 not represented in the dataset |
Glyma17g11301 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g22490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g104500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11301.2 sequence type=transcript gene model=Glyma17g11301 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGATTTGGAGGGGGAATATCCTATTGGATCGGGTCAGACCCGGGTACACATCGGTGGGTGGGTGGGTCCTGCAATTCCTTCCTTCTCCTTCTGCTTTGCTGCATCTAAACACAGTACGATTCGCAATTTGTTGTTGATCACTCGAAAGCAAACAATCATGGGAGGTGGGAACAGAAGATCAAAAGGTGGTGGAAACAGAAAATCCAACAACAGCAGTGGCTGCGGCAACCCTAAATCTCGAAAAAGAGGTTCGGATGTTAAGAGCGCTTTGTTCGTCGAAGGCGGTTTCTTGTCTGATTGGCATCTCCCTTCCCCTACCCAAAATCCAGAGAGAAGTTCTGGGTCCAATAACAAATCCGGGAGCCAGCGTAGAGCAGCAGAAGGATCTGCATCTAAAAGAGGTCGCATGTGCTGGGATTGGAAACAATGGTGAAGATAGTAATTTAAATCAGCTGCAACCTTTGGTTTTGGCAGACTCCAAGCAGGGTCAAATTATTGCTCATATAGATCAAACACCTCCTTCAAAACCCAGCAATGTAAAATATGCGTACACTTATGATGCAGATTTTATTTTGGGTGACAGCTCTCATAGAGGATTATGTCTCCCTGCTGAACAAGAGAAAACCCCAAGTGGCATTGGCACTTTGTCTGAACAGATGCCCCAATCAACTCCAGTTTTAGATTCACCATCATTTGAGAAGGAGGCTGGTTCTGATGAGGGTATGGATTGTGAGTTAAGCAATCAGATCACAGAAGACTTGCCCTCAAATGTGTCTGCTGAGAGAAATTCAGGGTTTCTGTCAATTGGAGGCCTTAAATTATACACTCAGGACATCTCGGATGATGAAAGTGATGAATATAATGATGAAGACTCATCAGATGAGGACAGCTCTGCGTCTTCTGAGCCAGAAGAGTTACTTGGATCATCTGAAAGCAATGACTCTGAATACTCATCTGATAGTGATTCAGACATTGATGAAGAGGTAGCAGAAGATTATTTGGAAGGAGTTGGTGGTAGTGATAACATTATGGAAGCAAAATGGTTGCTAAAACCTGTTTTGGATGAGTCAGATGATGATAGTTCTTCCAGCAGTTGCTATGATGAGGCATTGGAGAAGTTGAGTGGCTTTGTCCTTCAAGAAGCCTCCAGGGAATATGACACGAAGAAAGCTCAATCATGGAAGAAACGCTCTGTAGGTTCTGGACCTTTAGCTTTGGAAGACCTAATGCTGGCAAAGGATCCAAGAAGCATCTCTGCTAGAAAGAAGCATGTTCCTCGGTTCCCTCAATCTTGGCCTTCACATGCTCAGAACAGTAAAGCTTCCAAAAGAATTCATGGTGAAAAAAAGAAACTTCGTAAAGAAAGGATTGCTGTAAAGCGCAGAGAAAGAATGCTGCACCGTGGGGTTGATCTTGAGAAAATTAATTCAAAATTAGAAAAAATTGTTTTGGAGGAAGTGGATATTTTCTCTTTTCAGCCTATGCATTTTCGGGATTGTTCACAGATACAACGATTAGCAGCAATATATCAAATGCAGAGTAACAGCCAAGGCTCAGGCAAAAAAAGATTTGTGACAGTGATGCGAACACAGTCTACATCCATGCCATCTTCAAGTGGTAGACAGCGCCTGGAAAAGTTGTTGGGAGTTGATGATGATGAGGATGCCGATTTTTCTGTTGCTGACTATGTGAATAAGAAATCTGTGAGTGGAGACAGAAGATTGGGAAAGAAAAATGCTAAAAGGAATGATTTTAGATTACAAGAACCTCAATCTGCCCAGAACAAGTACTCAGGAAGCCGTAAATTGAAAGACAAGAAAGGGAATGGACAAAAGGGTTCATATGCTAATCAGCCAGTGTCATTTGTATCAAGTGGCTTAATCAATTCAGAAACTTTACAAGTTACAGTTGTTGATGCTGAAGAGACAAATAGGAAGGGTGTCACCAGCTCTGCTAATATAGGTTCGTTTGAAGAACACACTACTGGTTTTGGTTCAAAAATGATGGCTAAAATGGGATACACGGAAGGAGCAGGATTGGGGAAAAATGGTCAAGGTATGGCACAGCCTATTGAGGTTATTCAAAGGCCTAAATCACTTGGTTTAGGTGTAGAATTCTACAACAATTCAGCTGAGCCAGCTAGGAACAAATCTTCAAGAGTTGGTGCTAAATCACTTGGTTTGGGTGTAGAATTTTCCAACAGCCCGGCTGAGCCAGCTAGGAACAAATCTTCCAAGGTTGGTTCTTTTGAAAAACATACCAAAGGCTTTGGATCAAAGATGATGGCAAAGATGGGCTTTGTGGAAGGTAATGGATTAGGTAGAGAATCACAAGGCATTACCACTCCGTTGAGTGCTGTTAGGCTACCAAAGTCGCGAGGACTAGGTGCCAAAAGTTAATTTATAAGTCATTTCTTTTCTGTGTTTGTTTCTAATTGTATGTTGGCTTAAATCTTATGATTCTCTCGTAGTTTAGCTTTACCGTGGGATATGACCATCTCTGAAATCACTCGGTTAAAATGCTATATTTCTAGCTCCTAGTTATTTGTTTTTTTTTCATTTTTTTAAGAACTAAGAAAACTAGTCCTATAGAGGACATGTAATTATGTTCAAGATACTTATGTTGAATGTGGCCAACTCTTGGATGACCACGTGGAATAATACTTTTATTTATTTTTTTCTTTAAGTTGTTGGTAACTTGTATAAATCATTATTCAAGTTACTGACCAAAGTCACCGTTTTCATT
>Glyma17g11301.1 sequence type=CDS gene model=Glyma17g11301 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGTGGGAACAGAAGATCAAAAGGTGGTGGAAACAGAAAATCCAACAACAGCAGTGGCTGCGGCAACCCTAAATCTCGAAAAAGAGGTTCGGATGTTAAGAGCGCTTTGTTCGTCGAAGGCGGTTTCTTGTCTGATTGGCATCTCCCTTCCCCTACCCAAAATCCAGAGAGAAGTTCTGGGTCCAATAACAAATCCGGGAGCCAGCGTAGAGCAGCAGAAGGATCTGCATCTAAAAGTGGGTTTGCGAAATCTTTGGGTGCTACTATTCGATACAGTTATCCTTCACTTGATGTTCAGGAGGTCGCATGTGCTGGGATTGGAAACAATGGTGAAGATAGTAATTTAAATCAGCTGCAACCTTTGGTTTTGGCAGACTCCAAGCAGGGTCAAATTATTGCTCATATAGATCAAACACCTCCTTCAAAACCCAGCAATGTAAAATATGCGTACACTTATGATGCAGATTTTATTTTGGGTGACAGCTCTCATAGAGGATTATGTCTCCCTGCTGAACAAGAGAAAACCCCAAGTGGCATTGGCACTTTGTCTGAACAGATGCCCCAATCAACTCCAGTTTTAGATTCACCATCATTTGAGAAGGAGGCTGGTTCTGATGAGGGTATGGATTGTGAGTTAAGCAATCAGATCACAGAAGACTTGCCCTCAAATGTGTCTGCTGAGAGAAATTCAGGGTTTCTGTCAATTGGAGGCCTTAAATTATACACTCAGGACATCTCGGATGATGAAAGTGATGAATATAATGATGAAGACTCATCAGATGAGGACAGCTCTGCGTCTTCTGAGCCAGAAGAGTTACTTGGATCATCTGAAAGCAATGACTCTGAATACTCATCTGATAGTGATTCAGACATTGATGAAGAGGTAGCAGAAGATTATTTGGAAGGAGTTGGTGGTAGTGATAACATTATGGAAGCAAAATGGTTGCTAAAACCTGTTTTGGATGAGTCAGATGATGATAGTTCTTCCAGCAGTTGCTATGATGAGGCATTGGAGAAGTTGAGTGGCTTTGTCCTTCAAGAAGCCTCCAGGGAATATGACACGAAGAAAGCTCAATCATGGAAGAAACGCTCTGTAGGTTCTGGACCTTTAGCTTTGGAAGACCTAATGCTGGCAAAGGATCCAAGAAGCATCTCTGCTAGAAAGAAGCATGTTCCTCGGTTCCCTCAATCTTGGCCTTCACATGCTCAGAACAGTAAAGCTTCCAAAAGAATTCATGGTGAAAAAAAGAAACTTCGTAAAGAAAGGATTGCTGTAAAGCGCAGAGAAAGAATGCTGCACCGTGGGGTTGATCTTGAGAAAATTAATTCAAAATTAGAAAAAATTGTTTTGGAGGAAGTGGATATTTTCTCTTTTCAGCCTATGCATTTTCGGGATTGTTCACAGATACAACGATTAGCAGCAATATATCAAATGCAGAGTAACAGCCAAGGCTCAGGCAAAAAAAGATTTGTGACAGTGATGCGAACACAGTCTACATCCATGCCATCTTCAAGTGGTAGACAGCGCCTGGAAAAGTTGTTGGGAGTTGATGATGATGAGGATGCCGATTTTTCTGTTGCTGACTATGTGAATAAGAAATCTGTGAGTGGAGACAGAAGATTGGGAAAGAAAAATGCTAAAAGGAATGATTTTAGATTACAAGAACCTCAATCTGCCCAGAACAAGTACTCAGGAAGCCGTAAATTGAAAGACAAGAAAGGGAATGGACAAAAGGGTTCATATGCTAATCAGCCAGTGTCATTTGTATCAAGTGGCTTAATCAATTCAGAAACTTTACAAGTTACAGTTGTTGATGCTGAAGAGACAAATAGGAAGGGTGTCACCAGCTCTGCTAATATAGGTTCGTTTGAAGAACACACTACTGGTTTTGGTTCAAAAATGATGGCTAAAATGGGATACACGGAAGGAGCAGGATTGGGGAAAAATGGTCAAGGTATGGCACAGCCTATTGAGGTTATTCAAAGGCCTAAATCACTTGGTTTAGGTGTAGAATTCTACAACAATTCAGCTGAGCCAGCTAGGAACAAATCTTCAAGAGTTGGTGCTAAATCACTTGGTTTGGGTGTAGAATTTTCCAACAGCCCGGCTGAGCCAGCTAGGAACAAATCTTCCAAGGTTGGTTCTTTTGAAAAACATACCAAAGGCTTTGGATCAAAGATGATGGCAAAGATGGGCTTTGTGGAAGGTAATGGATTAGGTAGAGAATCACAAGGCATTACCACTCCGTTGAGTGCTGTTAGGCTACCAAAGTCGCGAGGACTAGGTGCCAAAAGTTAA >Glyma17g11301.2 sequence type=CDS gene model=Glyma17g11301 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGAGCGCTTTGTTCGTCGAAGGCGGTTTCTTGTCTGATTGGCATCTCCCTTCCCCTACCCAAAATCCAGAGAGAAGTTCTGGGTCCAATAACAAATCCGGGAGCCAGCGTAGAGCAGCAGAAGGATCTGCATCTAAAAGAGGTCGCATGTGCTGGGATTGGAAACAATGGTGAAGATAGTAATTTAAATCAGCTGCAACCTTTGGTTTTGGCAGACTCCAAGCAGGGTCAAATTATTGCTCATATAGATCAAACACCTCCTTCAAAACCCAGCAATGTAAAATATGCGTACACTTATGATGCAGATTTTATTTTGGGTGACAGCTCTCATAGAGGATTATGTCTCCCTGCTGAACAAGAGAAAACCCCAAGTGGCATTGGCACTTTGTCTGAACAGATGCCCCAATCAACTCCAGTTTTAGATTCACCATCATTTGAGAAGGAGGCTGGTTCTGATGAGGGTATGGATTGTGAGTTAAGCAATCAGATCACAGAAGACTTGCCCTCAAATGTGTCTGCTGAGAGAAATTCAGGGTTTCTGTCAATTGGAGGCCTTAAATTATACACTCAGGACATCTCGGATGATGAAAGTGATGAATATAATGATGAAGACTCATCAGATGAGGACAGCTCTGCGTCTTCTGAGCCAGAAGAGTTACTTGGATCATCTGAAAGCAATGACTCTGAATACTCATCTGATAGTGATTCAGACATTGATGAAGAGGTAGCAGAAGATTATTTGGAAGGAGTTGGTGGTAGTGATAACATTATGGAAGCAAAATGGTTGCTAAAACCTGTTTTGGATGAGTCAGATGATGATAGTTCTTCCAGCAGTTGCTATGATGAGGCATTGGAGAAGTTGAGTGGCTTTGTCCTTCAAGAAGCCTCCAGGGAATATGACACGAAGAAAGCTCAATCATGGAAGAAACGCTCTGTAGGTTCTGGACCTTTAGCTTTGGAAGACCTAATGCTGGCAAAGGATCCAAGAAGCATCTCTGCTAGAAAGAAGCATGTTCCTCGGTTCCCTCAATCTTGGCCTTCACATGCTCAGAACAGTAAAGCTTCCAAAAGAATTCATGGTGAAAAAAAGAAACTTCGTAAAGAAAGGATTGCTGTAAAGCGCAGAGAAAGAATGCTGCACCGTGGGGTTGATCTTGAGAAAATTAATTCAAAATTAGAAAAAATTGTTTTGGAGGAAGTGGATATTTTCTCTTTTCAGCCTATGCATTTTCGGGATTGTTCACAGATACAACGATTAGCAGCAATATATCAAATGCAGAGTAACAGCCAAGGCTCAGGCAAAAAAAGATTTGTGACAGTGATGCGAACACAGTCTACATCCATGCCATCTTCAAGTGGTAGACAGCGCCTGGAAAAGTTGTTGGGAGTTGATGATGATGAGGATGCCGATTTTTCTGTTGCTGACTATGTGAATAAGAAATCTGTGAGTGGAGACAGAAGATTGGGAAAGAAAAATGCTAAAAGGAATGATTTTAGATTACAAGAACCTCAATCTGCCCAGAACAAGTACTCAGGAAGCCGTAAATTGAAAGACAAGAAAGGGAATGGACAAAAGGGTTCATATGCTAATCAGCCAGTGTCATTTGTATCAAGTGGCTTAATCAATTCAGAAACTTTACAAGTTACAGTTGTTGATGCTGAAGAGACAAATAGGAAGGGTGTCACCAGCTCTGCTAATATAGGTTCGTTTGAAGAACACACTACTGGTTTTGGTTCAAAAATGATGGCTAAAATGGGATACACGGAAGGAGCAGGATTGGGGAAAAATGGTCAAGGTATGGCACAGCCTATTGAGGTTATTCAAAGGCCTAAATCACTTGGTTTAGGTGTAGAATTCTACAACAATTCAGCTGAGCCAGCTAGGAACAAATCTTCAAGAGTTGGTGCTAAATCACTTGGTTTGGGTGTAGAATTTTCCAACAGCCCGGCTGAGCCAGCTAGGAACAAATCTTCCAAGGTTGGTTCTTTTGAAAAACATACCAAAGGCTTTGGATCAAAGATGATGGCAAAGATGGGCTTTGTGGAAGGTAATGGATTAGGTAGAGAATCACAAGGCATTACCACTCCGTTGAGTGCTGTTAGGCTACCAAAGTCGCGAGGACTAGGTGCCAAAAGTTAA
>Glyma17g11301.1 sequence type=predicted peptide gene model=Glyma17g11301 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGGNRRSKGGGNRKSNNSSGCGNPKSRKRGSDVKSALFVEGGFLSDWHLPSPTQNPERSSGSNNKSGSQRRAAEGSASKSGFAKSLGATIRYSYPSLDVQEVACAGIGNNGEDSNLNQLQPLVLADSKQGQIIAHIDQTPPSKPSNVKYAYTYDADFILGDSSHRGLCLPAEQEKTPSGIGTLSEQMPQSTPVLDSPSFEKEAGSDEGMDCELSNQITEDLPSNVSAERNSGFLSIGGLKLYTQDISDDESDEYNDEDSSDEDSSASSEPEELLGSSESNDSEYSSDSDSDIDEEVAEDYLEGVGGSDNIMEAKWLLKPVLDESDDDSSSSSCYDEALEKLSGFVLQEASREYDTKKAQSWKKRSVGSGPLALEDLMLAKDPRSISARKKHVPRFPQSWPSHAQNSKASKRIHGEKKKLRKERIAVKRRERMLHRGVDLEKINSKLEKIVLEEVDIFSFQPMHFRDCSQIQRLAAIYQMQSNSQGSGKKRFVTVMRTQSTSMPSSSGRQRLEKLLGVDDDEDADFSVADYVNKKSVSGDRRLGKKNAKRNDFRLQEPQSAQNKYSGSRKLKDKKGNGQKGSYANQPVSFVSSGLINSETLQVTVVDAEETNRKGVTSSANIGSFEEHTTGFGSKMMAKMGYTEGAGLGKNGQGMAQPIEVIQRPKSLGLGVEFYNNSAEPARNKSSRVGAKSLGLGVEFSNSPAEPARNKSSKVGSFEKHTKGFGSKMMAKMGFVEGNGLGRESQGITTPLSAVRLPKSRGLGAKS* >Glyma17g11301.2 sequence type=predicted peptide gene model=Glyma17g11301 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRALCSSKAVSCLIGISLPLPKIQREVLGPITNPGASVEQQKDLHLKEVACAGIGNNGEDSNLNQLQPLVLADSKQGQIIAHIDQTPPSKPSNVKYAYTYDADFILGDSSHRGLCLPAEQEKTPSGIGTLSEQMPQSTPVLDSPSFEKEAGSDEGMDCELSNQITEDLPSNVSAERNSGFLSIGGLKLYTQDISDDESDEYNDEDSSDEDSSASSEPEELLGSSESNDSEYSSDSDSDIDEEVAEDYLEGVGGSDNIMEAKWLLKPVLDESDDDSSSSSCYDEALEKLSGFVLQEASREYDTKKAQSWKKRSVGSGPLALEDLMLAKDPRSISARKKHVPRFPQSWPSHAQNSKASKRIHGEKKKLRKERIAVKRRERMLHRGVDLEKINSKLEKIVLEEVDIFSFQPMHFRDCSQIQRLAAIYQMQSNSQGSGKKRFVTVMRTQSTSMPSSSGRQRLEKLLGVDDDEDADFSVADYVNKKSVSGDRRLGKKNAKRNDFRLQEPQSAQNKYSGSRKLKDKKGNGQKGSYANQPVSFVSSGLINSETLQVTVVDAEETNRKGVTSSANIGSFEEHTTGFGSKMMAKMGYTEGAGLGKNGQGMAQPIEVIQRPKSLGLGVEFYNNSAEPARNKSSRVGAKSLGLGVEFSNSPAEPARNKSSKVGSFEKHTKGFGSKMMAKMGFVEGNGLGRESQGITTPLSAVRLPKSRGLGAKS*
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