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Report for Sequence Feature Glyma17g11235

Feature Type:gene_model
Chromosome:Gm17
Start:8432127
stop:8454206
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11235
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20320AT Annotation by Michelle Graham. TAIR10: dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1702 SoyBaseE_val: 0ISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006353GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, termination SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010216GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of DNA methylation SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010599GO-bp Annotation by Michelle Graham. GO Biological Process: production of lsiRNA involved in RNA interference SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003725GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0004525GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease III activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016891GO-mf Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity, producing 5'-phosphomonoesters SoyBaseN/AISS
KOG0701 KOG dsRNA-specific nuclease Dicer and related ribonucleases JGI ISS
PTHR14950Panther HELICASE-RELATED JGI ISS
PTHR14950:SF13Panther DCL4 (DICER-LIKE 4), RNA BINDING / RIBONUCLEASE II JGI ISS
PF00035PFAM Double-stranded RNA binding motif JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF00636PFAM RNase3 domain JGI ISS
PF02170PFAM PAZ domain JGI ISS
PF03368PFAM Double stranded RNA binding domain JGI ISS
UniRef100_B9SC13UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233EAECUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EAEC related cluster n=1 Tax=unknown RepID=UPI000233EAEC SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g11235
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11235 not represented in the dataset
Glyma17g11235 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11235
ParalogEvidenceComments
Glyma13g22450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11235 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g104100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g11235
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g11235
>Glyma17g11235.1   sequence type=CDS   gene model=Glyma17g11235   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGACGGAGAATCCTCCGTCGTCGTCGCCGGCGGCCAAGCTTCCATGGAACCCTCCTTAAGCGTCTCCAATCAACTGCAGTCCCTGAGTCTTTCCCAAGACAAAAACCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTATGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTAGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGTATGGGATGGGTCATTTGATTCGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTCCATCAGCAAGCAAAGGTTATAGCAGACTCTACTAATTTTAAGGTTGGGACATACTGTGGAAGTTCCAAGCGCTTGAAACGTCATCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCATAACTTATCTCATTGCTTCATCACAATGGAGATGATTGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTTATCATGAAAGTCTTCTACAAAAGTAATTCCTCAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATACTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCATTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGTACCTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAAACCTTGGTAGGAGTATAGAAGATCACCAGAAAAGGATGAATGCAAAGAAACTTCTGAACCGGATGCATGATAATGTGATTTTCGGTCTGCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAGTTAGTGGAGGCTGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTGTTTACTTCACAATGCATGATAGGCGACAGGGTAACTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGCTTTTACGACTCATTGGGATATTATCCAACTTTAGGTTGCAAAAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACAGCAAGATCCCTGTCATACATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTCCTAGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATCTACTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACGTGTTGCCTCGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAACTTGACATAATTGATGGCTTTGAGAAAGATGAATACCGAATGAATATGGAAATTACTTTTCGAACATCCAAGGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCATGTTTTTATTACTTAGATGATTCAGGGGGGATTTCCTGCCATATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTAGGTACACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAATTTAGGCACTTTAAGTGATTGTCTCTTGCCAAAACAAGATGATGCAGAGCCAGAGGCGCAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAATGAGGATAACATCGTCCGTCTCAACTCTTACTACATAAAATTTTGTCCCTATCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGTTCGGCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTCGTTTCTGAGTTTGTAGACTTGGGTATGGGTGCTGAATCTCACACAGGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTGCAAGAATATGGAAATGCCATGAAAGTAGACTGGAAGACTGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTTTATTTTGTCACGAATGTTAACTACCAAAAGAATGGATATAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGTCCAGAACAACCACTTCTACATGTTAAACCAGTCTCCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATGCAGAACCACAGGAGCTGGACGAATACTTAATTTATTTGCCTCCTGAGCTTTGTGAACTAAAAATAATAGGTTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACAGGCTATCTTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTTTAGAAGCTCTCACTACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTTCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGCTCCAACGCTGTGAATAATTCCAATCTGTTTAAGTTGGCTATCAAGCGCAATTTGCAGGTCTATATATGCGATCAGACATTTGATCCCACTCAGTTTTATGCATTAGGCCGTCCTTGCCCAAGACTTTGTAGCAATGAAACCAAAGAAAGCATACACTTCTGTTTAAATTCTGTTAAGGAACAAGGAAAAGTAACTGAAACCCAATGTAACAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTTCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCTTTTCTTTCATGGATTGGCATTCAAGTTGATTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTAGTTATTTACCTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAGGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATGTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCTTGTCTAGCGGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGTGGCCTGTCTGAGGCAATAAAAAAGTATGTTGACTACATTAGAAGACCTGTATCAGATAACAGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACTCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATATGGAGTTGGAGTTTCTGCCAGTGCCCTCAAAATTGACTAAAAGGTTTTCAGTTGAAGCTAAAGTGAGTGGGAATGGTGTATGTGAAACAGCTTCAGCAACTGGTCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACTGCTACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAGACTCCCATTGATGTAACAGATACCAATAAACACATAGTGGTTAATGCAGACCCATACAACAAGTCTAACCCAGAAATTCGCCCTATGCAAGAGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTCGGCCAACGGCTTCAATCTTCTGCTAAGGGAAAGCTTAGTCAAATATTTGAAAATCGTGATTGCAGCAGTGACTTGTCAGGGACAGGAACGGCAAGATCACGATTGTATGAATTATGTGCTTCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAGGCAGAGGGACCTGACCACCTGAAACAATTCACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTTTCAAAGAAGAAAGATGCAGCAGAGAGTGCGGCAGAGGGTGCATTTTGGTATCTACAACATGAAGGTTACTTGCCTAGTAGTGGTAATTGA
Predicted protein sequences of Glyma17g11235
>Glyma17g11235.1   sequence type=predicted peptide   gene model=Glyma17g11235   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPDGESSVVVAGGQASMEPSLSVSNQLQSLSLSQDKNHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTNFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVPRIFGMTASPVVGKGASSEANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKRQCIANLGRSIEDHQKRMNAKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSAKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITFRTSKETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPCFYYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKRDACLKAIEELYNLGTLSDCLLPKQDDAEPEAQVSGSSDEDECEDAISRGELHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFIMVRLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFVSEFVDLGMGAESHTGTSTFYLLLPVVLQEYGNAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKNFYFVTNVNYQKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLHNRKHEDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHRLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHFCLNSVKEQGKVTETQCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVDFEASQVVDICIASASYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSDNSIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDSIMKFSSSLQLSPVRDLRELCQSHNMELEFLPVPSKLTKRFSVEAKVSGNGVCETASATGQNKKEACRIASLLLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNKHIVVNADPYNKSNPEIRPMQETDEICSPCVKPFGQRLQSSAKGKLSQIFENRDCSSDLSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKDAAESAAEGAFWYLQHEGYLPSSGN*






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