Glyma17g11220 - SoyBase

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Report for Sequence Feature Glyma17g11220

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8424777
stop:	8430480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G07690	AT	Annotation by Michelle Graham. TAIR10: Minichromosome maintenance (MCM2/3/5) family protein \| chr2:3523379-3527388 REVERSE LENGTH=727	SoyBase	E_val: 0	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006268	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0000790	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
KOG0481	KOG	DNA replication licensing factor, MCM5 component	JGI		ISS
PTHR11630	Panther	DNA REPLICATION LICENSING FACTOR	JGI		ISS
PTHR11630:SF42	Panther	DNA REPLICATION LICENSING FACTOR MCM5	JGI		ISS
PF00493	PFAM	MCM2/3/5 family	JGI		ISS
UniRef100_B3GNI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minichromosome maintenance 5 protein n=1 Tax=Pisum sativum RepID=B3GNI3_PEA	SoyBase	E_val: 0	ISS
UniRef100_I1MTX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTX9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g11220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11220

Paralog	Evidence	Comments
Glyma13g22420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g104000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11220

Limit To All Plant Sequences

>Glyma17g11220.1   sequence type=CDS   gene model=Glyma17g11220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGCTGGGACGAAGGAGCCGTCTACTACAGCGACCAGGCCCTCGCCGGCGACGACGGTGCCGGCGCCCGCGGTGAAGCTGGCACTGATTCCAACCACACTCTCATCCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACAACCAACAATGTCTTCCCTTACAGAGAGAGTCTCATCCACAACCCTAAGTTCCTTCTCGTCGATATGGGAGATCTCGACACCTTCGACTCCGAGCTTCCCGCGAAACTCCGCTCTAACCCCGCCGATGTCTTGCCCTTGTTCGAAACAGCAGCGGCTCAGGTTCTCGTGAATTTAAAGACGAAGGTGGCTGGGGATACCGGAGATATGGAGGATCAGACGCCTGGTGATGTTCAGATTCTGCTCACATCCAAAGAGGATCCAGTGTCGATGAGATCGCTCGGGGCTCAATATATATCAAAGCTTGTTAAAATTGCTGGGATTACTATTGCTGCATCCAGAACTAAGGCAAAGGCCACTTATGTTACCTTGATATGTAAAAATTGTAAGAAGGGGAAACAGGTTCCATGTCGGCCAGGACTTGGGGGAGCAATTGTTCCTCGATCTTGTGATCATGTTCCTCAGCCTGGTGAAGAACCTTGTCCAATTGATCCCTGGCTCGTGGTTCCTGACAAGAGCAGATATGTTGATCAACAAACTTTGAAGATGCAAGAAAATCCAGAGGATGTTCCAACTGGAGAACTTCCTAGAAACCTGCTTCTCTCTCTTGATCGACATCTGGTTCAGACAGTGGTGCCTGGCTCAAGATTGACAATCATGGGAATTTTTAGTATCTACCAGGCTTCTAACTCTAATACATCTAACAAAGGAGCAGTTGCAATTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAACAAATGAGACCAATTCTCGGGGTCCAGCTGCATTTACACAAGATGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCGTATAAAAATATCTGCTCCATGATTGCTCCCTCTATATTTGGGCACGATGATGTCAAAAAGGCTGTTGCCTGTCTTCTGTTTGGAGGGTCAAGAAAGAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAGTTTCTGAAGTTTGTTGAAAAGACTGCCCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCAGCTGGCCTAACCGCTTCTGTAATCCAAGATAGCGGCACTCGTGAGTTTTATCTTGAAGGAGGGGCTATGGTCTTGGCCGATGGAGGTGTTGTCTGCATTGACGAGTTTGATAAGATGAGGCCAGAAGACAGAGTTGCCATTCATGAGGCCATGGAACAACAAACTATATCTATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATCGTGAAAGACGTCAGAATGTACAGTCAAGACAAGATAATAGCTAATCATATCATAAAGGTCCATAAATCAGCTGGTGGAAGGATGGGAGAGAGCAGAACTTTGAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAACTCAATGCCACCCTCGTCTATCTGAATCAGCAACAACATTATTGCAGAATCATTATGTGAAAATCAGACAGGATATGAGACAACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATTACTGTGAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAACTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCAGTAAGGCTTTTCACCGTGTCAACAATGGATGCAGCCAAGTCAGGAATAAACCAACAAATAAATCTTACACCTGATATGGCAAATGAGATAAAGCAAGCTGAAACACAGATAAAGAGAAGAATTGGAATTGGAAACCACATATCGGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTGTGAGAAGAGCTCTTATAATCATGCACCAGAGAGATGAAATAGAGTACAAGAGAGAAAGGCGTGTTGTATTTAGAAAAGCATGA

Predicted protein sequences of Glyma17g11220

Limit To All Plant Sequences

>Glyma17g11220.1   sequence type=predicted peptide   gene model=Glyma17g11220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGWDEGAVYYSDQALAGDDGAGARGEAGTDSNHTLIQKFKEFIRNFETTNNVFPYRESLIHNPKFLLVDMGDLDTFDSELPAKLRSNPADVLPLFETAAAQVLVNLKTKVAGDTGDMEDQTPGDVQILLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLVVPDKSRYVDQQTLKMQENPEDVPTGELPRNLLLSLDRHLVQTVVPGSRLTIMGIFSIYQASNSNTSNKGAVAIRQPYIRVVGIEETNETNSRGPAAFTQDEIEEFKKFAAEPDAYKNICSMIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSGTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIANHIIKVHKSAGGRMGESRTLKEENWLKRYLQYCRTQCHPRLSESATTLLQNHYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAVRLFTVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA*

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