SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80710 | AT | Annotation by Michelle Graham. TAIR10: DROUGHT SENSITIVE 1 | chr1:30333499-30335796 REVERSE LENGTH=516 | SoyBase | E_val: 2.00E-145 | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG4328 | KOG | WD40 protein | JGI | ISS | |
| PTHR26208 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26208:SF50 | Panther | JGI | ISS | ||
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_D7KX28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transducin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KX28_ARALL | SoyBase | E_val: 6.00E-144 | ISS |
| UniRef100_I1MTX8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTX8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g11210 not represented in the dataset |
Glyma17g11210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g22410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g103900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11210.1 sequence type=CDS gene model=Glyma17g11210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCCGCAGAAACTCAACGATTACGAACGGAAGCGACTCGAGAACATTCGCCGCAACGATGAAATGATGGCTGCCCTCAAACTCCACTCCAAAGCCACCCAACTCTCCAACTTCAAGCGTAGTCAAAGGGTTGGAACCAAATCCTACAACATGAAATCGGAAAAGAAACCCAAAACCGAAACCCCAATTGTGATTAGGCGCTCCCTCCGAACAAGAGGTATTCCGCCAGATTCCAAAGGTCTTGTCGGAGATTCCGTGGGCCCCACCACTCCCACTAAAACTAAACCTTCCGTTGTTAATTTGGGTCCTATTTCCATGGCTGATGCTCGTGAAAGCGCTCACTCTGATAGCTCCTTCGTTGAATCACTCATGGGTATGGCCCAATTGGAAGCCCAAGATGTTAGGGTTGAAAAAGAGAAAGTGGAGGCTTCCCTTGGGTTGGAATCTCTGTATTTGGATCCCAAGAATATTGCGCGGGTTGTTCCTGGAAGGATAACCAGTTTGCGATTTTTTCCGTCCAGTAGTGTCAAAATGGTCGCGGTGGGTAACAAGTTTGGGAATGTCGGGTTCTGGAATGTGGGAGGAAGTGAAGTTCATTTATACCGACCCCATCGAGCTCCCATTTCTGGGATCCTGATTCAACCACATTGCTTCTCCAAGATATACACAAGTTGCTATGATGGAATTCTCCGGCTAATGGATGTTGAGAAGGAAATCTTTGATCTGGTATTTGAGTGTGATGAAAGTATATATGCTCTCTCTCTACCAACGAATGAGACAAACTGCCTATATCTTGCTGAGGGTTATGGAGGTTTGACTATTTGGGATAACAGGATTGGAAAACGTTCATCACACTGGGTTTTGCATGAAAGTAGGATTAACACCATAGATTTCAACTGTGAAAACCCTCATATTGTAGCTACTAGTTCCACTGATGGAACTGCCTGCACCTGGGATTTGAGATATACTGATGGGGATAAGCTCAGAGCCTTGAGGACATTTACCCACAAAAGATCTGTGCAATCTGCTTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTGGACAACACAATTGGTATTTACAGTGGAGTTAACTTGGAGGATGCAGCTGTTATTAATCATAACAATCTGACTGGCAGATGGCTTTCTACTTTCAGAGCAAAATGGGGTTGGGATGACTCATATCTCTTTGTTGGAAACATGAAAAGAGGAGTTGATGTTGTCTCATCAGTTGAAAGGAAAATAGTTATGACTCTAGAGAGCCAGCACATGTCTGCCATTCCTTGCAGATTTGATACACACTCTTACGAGGTTGGGATGCTAGCAGGAGCTACAAGTGGAGGCCAGGTTTATATTTGGACGTCGCGCTAG
>Glyma17g11210.1 sequence type=predicted peptide gene model=Glyma17g11210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPQKLNDYERKRLENIRRNDEMMAALKLHSKATQLSNFKRSQRVGTKSYNMKSEKKPKTETPIVIRRSLRTRGIPPDSKGLVGDSVGPTTPTKTKPSVVNLGPISMADARESAHSDSSFVESLMGMAQLEAQDVRVEKEKVEASLGLESLYLDPKNIARVVPGRITSLRFFPSSSVKMVAVGNKFGNVGFWNVGGSEVHLYRPHRAPISGILIQPHCFSKIYTSCYDGILRLMDVEKEIFDLVFECDESIYALSLPTNETNCLYLAEGYGGLTIWDNRIGKRSSHWVLHESRINTIDFNCENPHIVATSSTDGTACTWDLRYTDGDKLRALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYSGVNLEDAAVINHNNLTGRWLSTFRAKWGWDDSYLFVGNMKRGVDVVSSVERKIVMTLESQHMSAIPCRFDTHSYEVGMLAGATSGGQVYIWTSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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