Glyma17g11140 - SoyBase

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Report for Sequence Feature Glyma17g11140

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8368031
stop:	8370962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03350	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 \| chr2:1019733-1021071 REVERSE LENGTH=179	SoyBase	E_val: 4.00E-79	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PF04398	PFAM	Protein of unknown function, DUF538	JGI		ISS
UniRef100_B6T306	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cp protein n=1 Tax=Zea mays RepID=B6T306_MAIZE	SoyBase	E_val: 3.00E-69	ISS
UniRef100_I1MTX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTX1_SOYBN	SoyBase	E_val: 1.00E-121	ISS

Expression Patterns of Glyma17g11140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11140

Paralog	Evidence	Comments
Glyma05g00771	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g103200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11140

Limit To All Plant Sequences

>Glyma17g11140.1   sequence type=CDS   gene model=Glyma17g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGCTCTCACTAAACTGGGTAGCACTTGGATCTCCAAGAAAGCCAAGGCAGAGATTTCCCACATAACCGACGACCTATCATCTCTCTCAAATACTGTCGAAGAGAAGGCAAAGCTTTTCATCAACAAGCTCAAAGGTAAAACCCAGAAAGCCTTGCCAGATCTCCTTCGAGAGTACAGCATTCCTCCGGGTCTGTTCCCCCGCAACATAACATGCTACGAATTTGATGCATCAAAGGGAAAGTTGATCGTGTACTTATCCTCACCCTGTGAGGTGTGCTTCAAGGACTCATCCATTGTGAGGTATGCAAATCGTGTCAAAGGAACATTATCAAAGGGGAAGCTCAGTGTTACAGATGGAATGAAGACCAAGGTTCTTGTGTGGGTCAAGGTGACTAGTGTTGTTGTTGAGAGTTACAAGTCTGACAAAGTATGGTTCACTACCACCGGAGTTAAGAAATCAAGGCCCAAAGATGCATATGAAATGCCTCGTGATGCTATTAAGGTAGAAGAATTTTGA

Predicted protein sequences of Glyma17g11140

Limit To All Plant Sequences

>Glyma17g11140.1   sequence type=predicted peptide   gene model=Glyma17g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKALTKLGSTWISKKAKAEISHITDDLSSLSNTVEEKAKLFINKLKGKTQKALPDLLREYSIPPGLFPRNITCYEFDASKGKLIVYLSSPCEVCFKDSSIVRYANRVKGTLSKGKLSVTDGMKTKVLVWVKVTSVVVESYKSDKVWFTTTGVKKSRPKDAYEMPRDAIKVEEF*

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