Glyma17g11090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g11090

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8310648
stop:	8312461
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61340	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:24662064-24663044 REVERSE LENGTH=326	SoyBase	E_val: 3.00E-79	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MTW6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTW6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QN67	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QN67_ORYSJ	SoyBase	E_val: 3.00E-51	ISS

Expression Patterns of Glyma17g11090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11090

Paralog	Evidence	Comments
Glyma05g00830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g102700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g11090

Limit To All Plant Sequences

>Glyma17g11090.1   sequence type=CDS   gene model=Glyma17g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTTTCATGCAAGATTCTCAGAAGATCAACTCACAGTTTTCTGCAAAACTATCATTACTTCACCTCAACAGCAGCTTTCTTAGCTTTTCCTTTCTCAGCTTCAATACTCCTCTCTCAAGCATTAGTCCCTTCTCCTTCATCCCTCTTGCCTCAAATCTATAGCCGACTAAGGACTCTCTTTGATGCTGCAGGCTTCCCTTCTTCACAATTGTTTACCATTCTCAACCTCAAAGTTTCTCAAACAATCACTTCTTCAATCCTCACCCTTCCTTTCACACTCACCTTTCTCCTCATTGCAAAAGCATCCATAATTCAGGCTCTCAATCACCACAAACCAACTTTTCCACCATCCTTCAAATCAATACTATCCCTTTACAAGCCTCTCCTCCACACCTATTTTTGCAACTGTTTCTTGATTCTCTCAGCAAATGCAAGTGCTTTTGGTCTCATGTTTTCGGCCTTCAGCTTCATTGAAAGACTTGGCTACTCTTCCTCCCCTAGTGGCCTCATCCTCTTCATGTCAGTAACTGGGGCAATTCTCTTTTCTGTGATTCTTGCCAATGCTATTGTCATATGCAACATGGCACTGGCTCTATCTGGCATGGAGGGACATGGTGGATACTTGGCAATTCTGAAAGCATGTCTTCTCCTAAGGGGAAGGACTTCAATGGCTTTGTTCCTGGCACTTCCTGTCAATGTGGCCTTGGCTGCCATTGAGGCCTTGTTCCAATTCAGGGTTGTGAGGCCCTATCATATTGCTGGAATAACAAGGCCTTGTGTGGCTTTGGAGGGGATTTTCATTGCTTACCTCTACTCAATTTTCATCATCCTTGACACGGTTGTGAGCTGCATGTTCTACAAAAGCCTTAAGACAGGACCACTGATCGGTCATGAGGACAAACATTTGTTCAGGATTGAATTCCCAGATGAAGACAAGTACGGTTACATGGGCACCAAGGAACTTCCTTGA

Predicted protein sequences of Glyma17g11090

Limit To All Plant Sequences

>Glyma17g11090.1   sequence type=predicted peptide   gene model=Glyma17g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSCKILRRSTHSFLQNYHYFTSTAAFLAFPFSASILLSQALVPSPSSLLPQIYSRLRTLFDAAGFPSSQLFTILNLKVSQTITSSILTLPFTLTFLLIAKASIIQALNHHKPTFPPSFKSILSLYKPLLHTYFCNCFLILSANASAFGLMFSAFSFIERLGYSSSPSGLILFMSVTGAILFSVILANAIVICNMALALSGMEGHGGYLAILKACLLLRGRTSMALFLALPVNVALAAIEALFQFRVVRPYHIAGITRPCVALEGIFIAYLYSIFIILDTVVSCMFYKSLKTGPLIGHEDKHLFRIEFPDEDKYGYMGTKELP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain