Glyma17g11071 - SoyBase

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Report for Sequence Feature Glyma17g11071

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8300289
stop:	8302109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11071

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6TNL6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNL6_SOYBN	SoyBase	E_val: 3.00E-31	ISS

Expression Patterns of Glyma17g11071

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11071 not represented in the dataset	Glyma17g11071 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11071

Paralog	Evidence	Comments
Glyma05g00850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11071 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g102500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11071

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11071

Limit To All Plant Sequences

>Glyma17g11071.2   sequence type=transcript   gene model=Glyma17g11071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTAAGGCAATGGGATACTTGGCCTTAGCATTTGATTAATTGGCATTTATTTGATCTTGAGTTAAGTTAGAAAAGTCGATTGATTTAGACGCCTAGCCCTTGGAGGTAATAACTTAATAAAATTCAATAATTTCTGAGTTGAATGAAGAAGGATGGTTCCAAATGATTTGGTATTTCCCCCAATCGACCACGAAAACCTCAAAATTTTGTCATCAGAATACCACGCCCCTCTCTCACCTCCTCCACCTCAACCCTCACCCTTCGCCTGGATTAGTATCCCCCTCCACATTTTGCATTCCAAGCTTTCATCTTTTCGCCTGAGAGGCCCAATTTGGTCATTTGGTCTTCCCGCTGCGGCGCTCCTCATGTCCTGCTGGATCCTCATCGCCATCAGGAAGAACAAGAGAACCCTCACTCCCAATGAAGCTCGTCTCATCAACATCATCAACAACAAAGATCGGAAAATTGCCAAACTCTTGCACCAGATTGCACAAATGAATGAAATACTTATTGATCGGCACAAAGCTTTGGCTGCAAAAGTGATGAAATGATTGCCTAAAGGTTGTGAATATGGTTGGTAGCTGGCATTCACATGGAACAGTGATCAGGAGCTTCACTCTACACTGATGCTGCTATTTTATTCTTTCTATTTTGAAATATCACTGCTTACGTGTGAATTTTGCAATTTGCTTGGATTCTGCATGTGAGAGTTAGGTTGTAAACTGACAAAGCAACTAATTGTCATTCTTCGCACATGTTCCTGCTACAGACGAGTGATTGAACATGTAACTCAGAATTGGCATCTCAAACCTAATCAAAGCAAATGGCTGACTGATGAAGCAACTTTTGGGTTATATCATTAATCTGCAAGACAACTTTGACGAATGAAGTCCTCCCTCCACTCCTCATGATTCATCATTCATGAATGACTAGTTCAGCTGGTAACCACAGAATTTACGCAGGGAAGCTGGCAGAACACTCTAACTGTACTAACTGTTAGTTAACTAGGTTCTTCGTGCTCAGATGTTTAGCACATGTTGCATTTGATCAAGTCCTTATGTTAACTTAATTACTTCCACCCAATTTGGTTAGCTTTTGGAAAATCAAAATCCCATTCTTTTATTTACTCTATTTGAGATGCATGTCACAGAACATCCAAGAACGTGTCATTCTAAAGCGTTATCGAGTGAATTTTGACTATATTAGTAAACAGGCCCTTGATTAATTATT

Coding sequences of Glyma17g11071

Limit To All Plant Sequences

>Glyma17g11071.1   sequence type=CDS   gene model=Glyma17g11071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCAAATGATTTGGTATTTCCCCCAATCGACCACGAAAACCTCAAAATTTTGTCATCAGAATACCACGCCCCTCTCTCACCTCCTCCACCTCAACCCTCACCCTTCGCCTGGATTAGTATCCCCCTCCACATTTTGCATTCCAAGCTTTCATCTTTTCGCCTGAGAGGCCCAATTTGGTCATTTGGTCTTCCCGCTGCGGCGCTCCTCATGTCCTGCTGGATCCTCATCGCCATCAGGAAGAACAAGAGAACCCTCACTCCCAATGAAGCTCGTCTCATCAACATCATCAACAACAAAGATCGGGGGTCCTATCTAACTGCAAGTGCATTGGATTGGATTGGAGGAAAATTATTATTGTTTTGTGAAGAAAGGCATTTCCTTGTGCTTGACTACATCATTCAAACATTGGATGTGCATGTAGGCATGAATGATTGA

>Glyma17g11071.2   sequence type=CDS   gene model=Glyma17g11071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCAAATGATTTGGTATTTCCCCCAATCGACCACGAAAACCTCAAAATTTTGTCATCAGAATACCACGCCCCTCTCTCACCTCCTCCACCTCAACCCTCACCCTTCGCCTGGATTAGTATCCCCCTCCACATTTTGCATTCCAAGCTTTCATCTTTTCGCCTGAGAGGCCCAATTTGGTCATTTGGTCTTCCCGCTGCGGCGCTCCTCATGTCCTGCTGGATCCTCATCGCCATCAGGAAGAACAAGAGAACCCTCACTCCCAATGAAGCTCGTCTCATCAACATCATCAACAACAAAGATCGGAAAATTGCCAAACTCTTGCACCAGATTGCACAAATGAATGAAATACTTATTGATCGGCACAAAGCTTTGGCTGCAAAAGTGATGAAATGA

Predicted protein sequences of Glyma17g11071

Limit To All Plant Sequences

>Glyma17g11071.1   sequence type=predicted peptide   gene model=Glyma17g11071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPNDLVFPPIDHENLKILSSEYHAPLSPPPPQPSPFAWISIPLHILHSKLSSFRLRGPIWSFGLPAAALLMSCWILIAIRKNKRTLTPNEARLINIINNKDRGSYLTASALDWIGGKLLLFCEERHFLVLDYIIQTLDVHVGMND*

>Glyma17g11071.2   sequence type=predicted peptide   gene model=Glyma17g11071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPNDLVFPPIDHENLKILSSEYHAPLSPPPPQPSPFAWISIPLHILHSKLSSFRLRGPIWSFGLPAAALLMSCWILIAIRKNKRTLTPNEARLINIINNKDRKIAKLLHQIAQMNEILIDRHKALAAKVMK*

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