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Report for Sequence Feature Glyma17g11051

Feature Type:gene_model
Chromosome:Gm17
Start:8293544
stop:8296848
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g11051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61370AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:24672008-24673471 REVERSE LENGTH=487 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7L385UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7L385_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MTW3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MTW3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g11051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g11051 not represented in the dataset
Glyma17g11051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11051
ParalogEvidenceComments
Glyma05g00870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g102300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g11051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g11051
>Glyma17g11051.2   sequence type=transcript   gene model=Glyma17g11051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCAACCGATCTGACACGACAGCTCTGGTAATATATAAATTCAGCCCGGACCTCTGAAGTTCAGCTTCGAACCCTAAATTTAAGACACAACAAGGGGTTCATCCGCAGTCCCTAAAATTTGGATTTTGTGGATGGCAGCATCTTACCTTTTCCCGTTAACGTGCAGTTGGGGTTGCTCACATCTCGCACAGCCCACGTGTCTGAACATTTAGAGTTACAGCGCTGCACATTACATGCTTGAAGAATTTCTCGAATGAGATTCAAGATGCATGCCATGTTGAAACCTGCGTGGAAACGCTTTTGGCTTCAAAATATGAGAACCCATAATTTGCAAATACTTCCATTTTCTCATTATTCCACATTGCAGTCAATGTCTGTCCATCCCCAGTTGCAAGAGCTTTGCAGCATTGTCATGAGCACTGTTGGTGGGCTAGATGAGCTGGAGTTGAGTCTAAATAAGTTCAAAGATTCTTTAACTTCATCTCTTGTAGCTCAGGCTATTGATTCTAGTAAGCATGAGGCACAAACTAGAAGATTGCTCAGGTTCTTCTTATGGTCTTGTAAGAATTTGAGTCATCGTTTGGAAGACAAGGATTATAATCATGCTCTTCGAGTTTTTGCTGAAAAGAAAGACTACACGGCAATGGATATTTTGATGGGAGATCTCAAGAAGGAGGGTCGAGCCATGGATGCTGAGACTTTTAGTCTTGTAGCAGAGAATTTGGTTAAACTAGGAAAAGAAGATGAGGCATTGGGTATTTTCAAGAACTTAGACAAGTATAAGTGTTCTATAGATGAATTTACAGTTACTGCTATCGTTAATGCCCTTTGCTCCAAAGGGCATGGTAAGAGGGCTGAAGGGGTAGTTTGGCATCACAACGACAAGATTACAGGCACAAAACCTTGCATATATAGAAGTCTTCTTTATGGGTGGTCTGTGCAGAGGAATGTGAAGGAAGCTAGGAGAATTATTAAAGAGATGAAATCAAATGGGGTTATCCCAGATTTGTTATGCTACAACACATTCCTCAGGTGCCTTTGTGAACGGAATCTTAGACATAATCCTTCAGGACTTGTGCCTGAAGCTTTAAATGTCATGATGGAGATGAAGTCACATAATGTTTTCCCAACCTCAATCAGTTATAACATACTGCTTTCTTGTCTAGGGAAGACCAGAAGAGTTAAGGAATCTTGTCAAATACTTGAAACAATGAAAATTTCTGGTTGTGATCCTGATTGGGTCAGCTATTATCTTGTGGCAAAGGTGTTGTTTCTGAGTGGCAGGTTTGGTAAAGGGAAAGAGATGGTGGATCAAATGATTGGAAAAGGTTTGGTGCCAAACCATAAGTTTTACTACAGTTTGATTGGTATTCTCTGTGGGGTTGAAAGGGTAAATTATGCTCTTGAACTGTTTGAGAAAATGAAGAAAAGCTCAATGGGAGGTTATGGACCAGTATATGATGTGCTCATTCCAAAGCTTTGTAGAGGAGGGGATTTTGAAAAGGGAAGAGAGCTTTGGGATGAAGCCTCAGGTATGGGCATCACTCTTCAGTGCTCAGAGGATGTTTTAGATCCTTCAATAACAGAAGTTTACAAACCTACAAGGCCAGAAAAAAGCAGCCATGTGGACAGCTCAAGAGCCAAGTCTCCACAAAAACTTACAAAGTTTTCAGGGAAAATGAAGATGAGAAAAAAAACAGCTGCAATGAAGAAGAAAAAGAAGTAAAAAAGTCTACTGCAACTTAATTATGGCAAAGCAGATTAGTTATATTTCACAATATGAAGCATAAACGCAGACAAGAGTCACAACTCATGGCACCACATGATCACTGACGAAGTCCAAATTAAAAAGACACGAGATGCATATTTATCCAAAGCAGATTATATAGATACGATGTGTTATTTATTCAAAACAGATTATTGTTTCAGTTTCTGTTCGCTGAATTACTTCAAGTTTGTCTTCGAATCTCCTTGTTCCAGGTAGGACAATAGGACAGTGGCAGAGAGGCGGATGACACAGTAATGGAGTTTGAGAGAGAAGGAGGGAGCGCTGCAAGATCAAGAAGATCTTGAAACCCCTCACATGGGCCTTGACAAGCACATGTAACTGAAGGCGCAATATGGGGATATTGTGGGCCCCCCTCTGCCTCACTCACGTTCCCGGTTGCAACTCTCCAATCTAACTTTCCACACTATGCAAGTGGATTCCACGCGGTTCCTATTCATCTATTCTATGTTATGTTATGTAATGTGGTTCCTTCTTCCTAGAAGATGCGGACACTAACTAACAAGTGCAGTGCGTAACAGAGCATAGACAACCATGGGTCCAATGCCAGAACGCCCAAAGCAAAGCTAGCTGGATTAGACTCCATCTACATCTATAGCATAAGCATACCATACATAAAAAAGATGCATTTTAATTAAATTTTAGGGATAAACATGTTTTTAATTCTTAACAATAGAATAAAGTTTGTTTTTAATTCCTGAAAAATAATTTTTTTATTCCTCTTTTATAAAAATGTGAATTGTCAATTATTGGTCTCTTATTCACATATAATGTATTTCCATAAATGAT
Coding sequences of Glyma17g11051
>Glyma17g11051.1   sequence type=CDS   gene model=Glyma17g11051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTCAAGATGCATGCCATGTTGAAACCTGCGTGGAAACGCTTTTGGCTTCAAAATATGAGAACCCATAATTTGCAAATACTTCCATTTTCTCATTATTCCACATTGCAGTCAATGTCTGTCCATCCCCAGTTGCAAGAGCTTTGCAGCATTGTCATGAGCACTGTTGGTGGGCTAGATGAGCTGGAGTTGAGTCTAAATAAGTTCAAAGATTCTTTAACTTCATCTCTTGTAGCTCAGGCTATTGATTCTAGTAAGCATGAGGCACAAACTAGAAGATTGCTCAGGTTCTTCTTATGGTCTTGTAAGAATTTGAGTCATCGTTTGGAAGACAAGGATTATAATCATGCTCTTCGAGTTTTTGCTGAAAAGAAAGACTACACGGCAATGGATATTTTGATGGGAGATCTCAAGAAGGAGGGTCGAGCCATGGATGCTGAGACTTTTAGTCTTGTAGCAGAGAATTTGGTTAAACTAGGAAAAGAAGATGAGGCATTGGGTATTTTCAAGAACTTAGACAAGTATAAGTGTTCTATAGATGAATTTACAGTTACTGCTATCGTTAATGCCCTTTGCTCCAAAGGGCATGGTAAGAGGGCTGAAGGGGTAGTTTGGCATCACAACGACAAGATTACAGGCACAAAACCTTGCATATATAGAAGTCTTCTTTATGGGTGGTCTGTGCAGAGGAATGTGAAGGAAGCTAGGAGAATTATTAAAGAGATGAAATCAAATGGGGTTATCCCAGATTTGTTATGCTACAACACATTCCTCAGGTGCCTTTGTGAACGGAATCTTAGACATAATCCTTCAGGACTTGTGCCTGAAGCTTTAAATGTCATGATGGAGATGAAGTCACATAATGTTTTCCCAACCTCAATCAGTTATAACATACTGCTTTCTTGTCTAGGGAAGACCAGAAGAGTTAAGGAATCTTGTCAAATACTTGAAACAATGAAAATTTCTGGTTGTGATCCTGATTGGGTCAGCTATTATCTTGTGGCAAAGGTGTTGTTTCTGAGTGGCAGGTTTGGTAAAGGGAAAGAGATGGTGGATCAAATGATTGGAAAAGGTTTGGTGCCAAACCATAAGTTTTACTACAGTTTGATTGGTATTCTCTGTGGGGTTGAAAGGGTAAATTATGCTCTTGAACTGTTTGAGAAAATGAAGAAAAGCTCAATGGGAGGTTATGGACCAGTATATGATGTGCTCATTCCAAAGCTTTGTAGAGGAGGGGATTTTGAAAAGGGAAGAGAGCTTTGGGATGAAGCCTCAGGTATGGGCATCACTCTTCAGTGCTCAGAGGATGTTTTAGATCCTTCAATAACAGAAGTTTACAAACCTACAAGGCCAGAAAAAAGCAGCCATGTGGACAGCTCAAGAGCCAAGTCTCCACAAAAACTTACAAAGTTTTCAGGGAAAATGAAGATGAGAAAAAAAACAGCTGCAATGAAGAAGAAAAAGAAGTAA

>Glyma17g11051.2   sequence type=CDS   gene model=Glyma17g11051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTCAAGATGCATGCCATGTTGAAACCTGCGTGGAAACGCTTTTGGCTTCAAAATATGAGAACCCATAATTTGCAAATACTTCCATTTTCTCATTATTCCACATTGCAGTCAATGTCTGTCCATCCCCAGTTGCAAGAGCTTTGCAGCATTGTCATGAGCACTGTTGGTGGGCTAGATGAGCTGGAGTTGAGTCTAAATAAGTTCAAAGATTCTTTAACTTCATCTCTTGTAGCTCAGGCTATTGATTCTAGTAAGCATGAGGCACAAACTAGAAGATTGCTCAGGTTCTTCTTATGGTCTTGTAAGAATTTGAGTCATCGTTTGGAAGACAAGGATTATAATCATGCTCTTCGAGTTTTTGCTGAAAAGAAAGACTACACGGCAATGGATATTTTGATGGGAGATCTCAAGAAGGAGGGTCGAGCCATGGATGCTGAGACTTTTAGTCTTGTAGCAGAGAATTTGGTTAAACTAGGAAAAGAAGATGAGGCATTGGGTATTTTCAAGAACTTAGACAAGTATAAGTGTTCTATAGATGAATTTACAGTTACTGCTATCGTTAATGCCCTTTGCTCCAAAGGGCATGGTAAGAGGGCTGAAGGGGTAGTTTGGCATCACAACGACAAGATTACAGGCACAAAACCTTGCATATATAGAAGTCTTCTTTATGGGTGGTCTGTGCAGAGGAATGTGAAGGAAGCTAGGAGAATTATTAAAGAGATGAAATCAAATGGGGTTATCCCAGATTTGTTATGCTACAACACATTCCTCAGGTGCCTTTGTGAACGGAATCTTAGACATAATCCTTCAGGACTTGTGCCTGAAGCTTTAAATGTCATGATGGAGATGAAGTCACATAATGTTTTCCCAACCTCAATCAGTTATAACATACTGCTTTCTTGTCTAGGGAAGACCAGAAGAGTTAAGGAATCTTGTCAAATACTTGAAACAATGAAAATTTCTGGTTGTGATCCTGATTGGGTCAGCTATTATCTTGTGGCAAAGGTGTTGTTTCTGAGTGGCAGGTTTGGTAAAGGGAAAGAGATGGTGGATCAAATGATTGGAAAAGGTTTGGTGCCAAACCATAAGTTTTACTACAGTTTGATTGGTATTCTCTGTGGGGTTGAAAGGGTAAATTATGCTCTTGAACTGTTTGAGAAAATGAAGAAAAGCTCAATGGGAGGTTATGGACCAGTATATGATGTGCTCATTCCAAAGCTTTGTAGAGGAGGGGATTTTGAAAAGGGAAGAGAGCTTTGGGATGAAGCCTCAGGTATGGGCATCACTCTTCAGTGCTCAGAGGATGTTTTAGATCCTTCAATAACAGAAGTTTACAAACCTACAAGGCCAGAAAAAAGCAGCCATGTGGACAGCTCAAGAGCCAAGTCTCCACAAAAACTTACAAAGTTTTCAGGGAAAATGAAGATGAGAAAAAAAACAGCTGCAATGAAGAAGAAAAAGAAGTAA
Predicted protein sequences of Glyma17g11051
>Glyma17g11051.1   sequence type=predicted peptide   gene model=Glyma17g11051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFKMHAMLKPAWKRFWLQNMRTHNLQILPFSHYSTLQSMSVHPQLQELCSIVMSTVGGLDELELSLNKFKDSLTSSLVAQAIDSSKHEAQTRRLLRFFLWSCKNLSHRLEDKDYNHALRVFAEKKDYTAMDILMGDLKKEGRAMDAETFSLVAENLVKLGKEDEALGIFKNLDKYKCSIDEFTVTAIVNALCSKGHGKRAEGVVWHHNDKITGTKPCIYRSLLYGWSVQRNVKEARRIIKEMKSNGVIPDLLCYNTFLRCLCERNLRHNPSGLVPEALNVMMEMKSHNVFPTSISYNILLSCLGKTRRVKESCQILETMKISGCDPDWVSYYLVAKVLFLSGRFGKGKEMVDQMIGKGLVPNHKFYYSLIGILCGVERVNYALELFEKMKKSSMGGYGPVYDVLIPKLCRGGDFEKGRELWDEASGMGITLQCSEDVLDPSITEVYKPTRPEKSSHVDSSRAKSPQKLTKFSGKMKMRKKTAAMKKKKK*

>Glyma17g11051.2   sequence type=predicted peptide   gene model=Glyma17g11051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFKMHAMLKPAWKRFWLQNMRTHNLQILPFSHYSTLQSMSVHPQLQELCSIVMSTVGGLDELELSLNKFKDSLTSSLVAQAIDSSKHEAQTRRLLRFFLWSCKNLSHRLEDKDYNHALRVFAEKKDYTAMDILMGDLKKEGRAMDAETFSLVAENLVKLGKEDEALGIFKNLDKYKCSIDEFTVTAIVNALCSKGHGKRAEGVVWHHNDKITGTKPCIYRSLLYGWSVQRNVKEARRIIKEMKSNGVIPDLLCYNTFLRCLCERNLRHNPSGLVPEALNVMMEMKSHNVFPTSISYNILLSCLGKTRRVKESCQILETMKISGCDPDWVSYYLVAKVLFLSGRFGKGKEMVDQMIGKGLVPNHKFYYSLIGILCGVERVNYALELFEKMKKSSMGGYGPVYDVLIPKLCRGGDFEKGRELWDEASGMGITLQCSEDVLDPSITEVYKPTRPEKSSHVDSSRAKSPQKLTKFSGKMKMRKKTAAMKKKKK*






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