SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61620 | AT | Annotation by Michelle Graham. TAIR10: 3'-5'-exoribonuclease family protein | chr3:22801382-22802910 REVERSE LENGTH=241 | SoyBase | E_val: 1.00E-140 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG1068 | KOG | Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases | JGI | ISS | |
| PTHR11953 | Panther | RIBONUCLEASE PH RELATED | JGI | ISS | |
| PF01138 | PFAM | 3' exoribonuclease family, domain 1 | JGI | ISS | |
| PF03725 | PFAM | 3' exoribonuclease family, domain 2 | JGI | ISS | |
| UniRef100_G7L401 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP41 n=1 Tax=Medicago truncatula RepID=G7L401_MEDTR | SoyBase | E_val: 1.00E-166 | ISS |
| UniRef100_I1MTV9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTV9_SOYBN | SoyBase | E_val: 2.00E-175 | ISS |
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Glyma17g11020 not represented in the dataset |
Glyma17g11020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g102000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g11020.4 sequence type=transcript gene model=Glyma17g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGGTTTTCGAAAACAAAAGGGTTTAACAACAGGGAATGTTGAAGTTGTTGCCGCGATTTTTTTTGCCGCAAAACGCAGCCGCGACAGCAAACCCGCACTGCACCAATAATTCTCGTCGCACCTGCACCCTGCGAATATTGACTACTCAGCTCTTGCTGCCATAGAGGATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAATTTTAGAGCAGAAGTAATATTTCCTATTTGCATCATGACGCGATGATTATTATTGTCGTTGGTCTTGTTTTTCCAGATTTATAGGTTCATTCTTTCAGCATTTGTGCATTTCTCATTTTGGATTAGAATTCTCCTGTATTTACCTGTAAACAATTTTGTTTTTTGCATACGGTGTTGACTAAAGGGAAGTGAGGGGAGAGGTTCTAACTTTGTGCATGTTTGAATTTCACTTGTGAGAGAGTTTAAAAGTTTTTTTCCTCCCAATAACAAATTCTTACTTGATTTTATGCATTAGAATTTACAAAAGTACTTTTTCAACTTTAATCCAAAG
>Glyma17g11020.3 sequence type=CDS gene model=Glyma17g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA >Glyma17g11020.4 sequence type=CDS gene model=Glyma17g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA
>Glyma17g11020.3 sequence type=predicted peptide gene model=Glyma17g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV* >Glyma17g11020.4 sequence type=predicted peptide gene model=Glyma17g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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