Glyma17g11020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g11020

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8276902
stop:	8281198
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61620	AT	Annotation by Michelle Graham. TAIR10: 3'-5'-exoribonuclease family protein \| chr3:22801382-22802910 REVERSE LENGTH=241	SoyBase	E_val: 1.00E-140	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1068	KOG	Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases	JGI		ISS
PTHR11953	Panther	RIBONUCLEASE PH RELATED	JGI		ISS
PF01138	PFAM	3' exoribonuclease family, domain 1	JGI		ISS
PF03725	PFAM	3' exoribonuclease family, domain 2	JGI		ISS
UniRef100_G7L401	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP41 n=1 Tax=Medicago truncatula RepID=G7L401_MEDTR	SoyBase	E_val: 1.00E-166	ISS
UniRef100_I1MTV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTV9_SOYBN	SoyBase	E_val: 2.00E-175	ISS

Expression Patterns of Glyma17g11020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g11020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g102000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11020

Limit To All Plant Sequences

>Glyma17g11020.4   sequence type=transcript   gene model=Glyma17g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGTTTTCGAAAACAAAAGGGTTTAACAACAGGGAATGTTGAAGTTGTTGCCGCGATTTTTTTTGCCGCAAAACGCAGCCGCGACAGCAAACCCGCACTGCACCAATAATTCTCGTCGCACCTGCACCCTGCGAATATTGACTACTCAGCTCTTGCTGCCATAGAGGATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAATTTTAGAGCAGAAGTAATATTTCCTATTTGCATCATGACGCGATGATTATTATTGTCGTTGGTCTTGTTTTTCCAGATTTATAGGTTCATTCTTTCAGCATTTGTGCATTTCTCATTTTGGATTAGAATTCTCCTGTATTTACCTGTAAACAATTTTGTTTTTTGCATACGGTGTTGACTAAAGGGAAGTGAGGGGAGAGGTTCTAACTTTGTGCATGTTTGAATTTCACTTGTGAGAGAGTTTAAAAGTTTTTTTCCTCCCAATAACAAATTCTTACTTGATTTTATGCATTAGAATTTACAAAAGTACTTTTTCAACTTTAATCCAAAG

Coding sequences of Glyma17g11020

Limit To All Plant Sequences

>Glyma17g11020.3   sequence type=CDS   gene model=Glyma17g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA

>Glyma17g11020.4   sequence type=CDS   gene model=Glyma17g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATACGTCAGCCCAGAAGGACTTCGCTTGGATGGTCGCCGACCAATGGAGATGCGACAAATTCGTGCAGAGATTGGTGCTGTATCCAAAGCAGATGGTTCTGCCATTTTCGAGATGGGTAATACCAAAGTCATTGCTGCTGTTTATGGCCCTAGAGAGGTGCAAAATAGGAATCAACAAATAAGTAGCCATGCTCTGGTTCGGTGTGAGTACAGCATGGCTAATTTTAGCACTGGAGATCGCATGAGGAAACCTAAGGGCGACAGGAGATCAACTGAAATTTCTCTGGTTATTCGACAAACTATGGAAGCTTGTATACTGACACATTTATTGCCTCGTTCCCAGATAGATATTTATGTCCAAGTTCTCCAAGCAGATGGAGGAACTAGATCTGCTTGTATAAATGCTGCAACTTTGGCCCTTGCCGATGCTGGGATTCCTATGCGTGATCTTGTAACTTCCTGTAGTGCTGGATACCTTAATAGCACCCCTCTGCTTGATTTGAACTATGTAGAAGACAGTGCTGGAGGTCCTGATGTAACTCTAGGAATTCTTCCGAAGCTGGATAAAGTGACACTTCTTCAGATGGATTCTAAACTACCAATTGACATTTTGGAAAATGTTATGCAACTGGCAATTGAAGGCTGCAAAGCAATAGCTAACTATATTCGAGAAGTTTTACTGGAGAACACAAAGCAACTTGAGTATCGACGAGGTGTATAA

Predicted protein sequences of Glyma17g11020

Limit To All Plant Sequences

>Glyma17g11020.3   sequence type=predicted peptide   gene model=Glyma17g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV*

>Glyma17g11020.4   sequence type=predicted peptide   gene model=Glyma17g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain