Glyma17g11000 - SoyBase

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Report for Sequence Feature Glyma17g11000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8267549
stop:	8271467
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g11000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74410	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27965723-27967681 FORWARD LENGTH=223	SoyBase	E_val: 1.00E-70	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22764	Panther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).	JGI		ISS
PTHR22764:SF23	Panther	OS10G0544600 PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RLW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1Q, putative n=1 Tax=Ricinus communis RepID=B9RLW0_RICCO	SoyBase	E_val: 2.00E-78	ISS
UniRef100_I1MTV5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTV5_SOYBN	SoyBase	E_val: 9.00E-154	ISS

Expression Patterns of Glyma17g11000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g11000

Paralog	Evidence	Comments
Glyma05g00900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g11000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g101800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g11000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g11000

Limit To All Plant Sequences

>Glyma17g11000.2   sequence type=transcript   gene model=Glyma17g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAGTAGTACTATTATTAATATATTTTAATAATATTTTCCTTGACATCAGTAAGTCCTATCATACCATCCAATCCCATCATTTTTGTTTTGATTGATCCATTCTAGCTAGCTTTCAATTCATTTTCTCCATTACCCCAAAATTTGGGCTCTTTCTTATCCTTTCTAATCTAATCCCACCATCATCTCATAACCAATAAACAACAAAAAGAACATCAGCAGCAGCCATGGCCCTGAAGTTTGCACCTTTCTGACACACCCAGGTTCTCCCAATTTGGGTTGGGCACCATGGAAACTGGAATAATCCAGGGACCTTGGGGATTTCGCTCTCTATCCAAATTCGTTTTATGCACCATTTCTGGGGCCCTTACCGTGTGTTTTGCCCTTGCTGGGGCCCTGACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCCACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCTGTGGAGGTGTTGGAAGCTTCCCGTGCCTATTGGTGTATGGAGCAAACTGGCTCACGGAGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGGTTGGCATTGCGAATACAGGCTATGTTGAGACTCATGATGTTCATGGCTTAGTTGCACCCAGAGGACTGTCAGGAGATTCATTGAAGAGGTTACCCCACCATATGATCTCAAAGGCAGAGAATACCTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGGGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCTTGTCCTGTCTGCAGACAGAATGTATAACTTGTTCCTTGGGCAATTTGAGATTATCTTTATGGGCGGATGTATATGTTTTATTATTTGTTTCTTTACATACAAACTGAGATTACCATTAAGTTTTGTATAGTTGACATTGGCATTTTGTACTATTCTGCGATGTAATTGTTAAATAATACTATTTGGTATGAAAGCCAATGCCCAATAACAAATGTTTTGGGAGAAAAAAAAAAGAGAAAATGGTAAACTTTGAAAAGTATATGAATGAATGATTACAATTTTCTAATTATGTTAATTCCATGTACAATTTTGCGTA

Coding sequences of Glyma17g11000

Limit To All Plant Sequences

>Glyma17g11000.1   sequence type=CDS   gene model=Glyma17g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTGGAATAATCCAGGGACCTTGGGGATTTCGCTCTCTATCCAAATTCGTTTTATGCACCATTTCTGGGGCCCTTACCGTGTGTTTTGCCCTTGCTGGGGCCCTGACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCCACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCTGTGGAGGTGTTGGAAGCTTCCCGTGCCTATTGGTGTATGGAGCAAACTGGCTCACGGAGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAGCAGGTTGGCATTGCGAATACAGGCTATGTTGAGACTCATGATGTTCATGGCTTAGTTGCACCCAGAGGACTGTCAGGAGATTCATTGAAGAGGTTACCCCACCATATGATCTCAAAGGCAGAGAATACCTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGGGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCTTGTCCTGTCTGCAGACAGAATGTATAA

>Glyma17g11000.2   sequence type=CDS   gene model=Glyma17g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTGGAATAATCCAGGGACCTTGGGGATTTCGCTCTCTATCCAAATTCGTTTTATGCACCATTTCTGGGGCCCTTACCGTGTGTTTTGCCCTTGCTGGGGCCCTGACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCCACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCTGTGGAGGTGTTGGAAGCTTCCCGTGCCTATTGGTGTATGGAGCAAACTGGCTCACGGAGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGGTTGGCATTGCGAATACAGGCTATGTTGAGACTCATGATGTTCATGGCTTAGTTGCACCCAGAGGACTGTCAGGAGATTCATTGAAGAGGTTACCCCACCATATGATCTCAAAGGCAGAGAATACCTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGGGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCTTGTCCTGTCTGCAGACAGAATGTATAA

Predicted protein sequences of Glyma17g11000

Limit To All Plant Sequences

>Glyma17g11000.1   sequence type=predicted peptide   gene model=Glyma17g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGIIQGPWGFRSLSKFVLCTISGALTVCFALAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRSASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANTGYVETHDVHGLVAPRGLSGDSLKRLPHHMISKAENTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV*

>Glyma17g11000.2   sequence type=predicted peptide   gene model=Glyma17g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGIIQGPWGFRSLSKFVLCTISGALTVCFALAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRSASSMADFIEELVRGRLVEESLTPAILTAYNLQVGIANTGYVETHDVHGLVAPRGLSGDSLKRLPHHMISKAENTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV*

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