SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18750 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 65 | chr1:6467266-6469640 FORWARD LENGTH=389 | SoyBase | E_val: 9.00E-93 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF60 | Panther | AGL30 | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| UniRef100_B9RLX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9RLX3_RICCO | SoyBase | E_val: 2.00E-153 | ISS |
| UniRef100_UPI000233EAE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EAE1 related cluster n=1 Tax=unknown RepID=UPI000233EAE1 | SoyBase | E_val: 0 | ISS |
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Glyma17g10941 not represented in the dataset |
Glyma17g10941 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g00960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g101300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g10941.2 sequence type=transcript gene model=Glyma17g10941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGATGTGAGTTTGTTAAAAACGTGTGCTATTTTGGATTTACATATAGAAGAAGATGTGACATACATAAGTTTGTTTGTAGGAAGAGAAAGGTGTTTGTTGCATATGCTGCCAACAGTTGGTGTCTCAAAAATCTTACCGTCCATTTTCACGTTACGAGCTTGGTTGGTTCTCTAAACTCCATCCACCGAAATCAAAGCTACACCTTTCGTCCTGCAACAATTTTTTAGCTCTTAGATATGATACTCATCTTTCCTTTTTTTCTCTCTACTCTGTATGTCTTTCCTTAAACAAATATTGTTCTAATTCTTTAGTTACCTCACACATTCACCTCTTTTCAACATTTTCATTCACTTCCCTCGATTTGTTTCCAATACATTGCCTCCACTATCGCAAGAAGGATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAATTGATTGGTAAATTGTTCATGGTGGCCTTTTCAAGTGAGAAGAATGTTAGCTGATAAGGACATGACCAATGCTTGCAAATCATCTCCACAAAAAACAACTTAAGTTGCCTTTCCACCTGTGAGGTTAACGGGGCTCATAAGAGTGGGCAATGTTAGTTGTATATATTGTATGACTTGTAGGATGCAGTTTGTTCCCATATAAGTATTTAAGTTGACTAGTAGATTTTTGGAATTGATCAATGAGCCAAGATGTAAATTTGAATTTTGTACAAAAATAATTTCGTGTGATTTGAGACTCGAGTGCAGTTATTTTAGAAAATCGTTTCTTGAAGTAAAAATTTGTTGATGCTCTTTATGTATAAGATAATATTCTGCTTTTATGTAAAAAATGATGAATTGGAGAATTAGGACAAAAAATGAGTATCAACAA
>Glyma17g10941.1 sequence type=CDS gene model=Glyma17g10941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAA >Glyma17g10941.2 sequence type=CDS gene model=Glyma17g10941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAA
>Glyma17g10941.1 sequence type=predicted peptide gene model=Glyma17g10941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLECANQLQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFSDNTNRDVECSTDISLPNYFGHIGSNKLEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPPPPDIEEVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHR* >Glyma17g10941.2 sequence type=predicted peptide gene model=Glyma17g10941 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLECANQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFSDNTNRDVECSTDISLPNYFGHIGSNKLEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPPPPDIEEVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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