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Report for Sequence Feature Glyma17g10880

Feature Type:gene_model
Chromosome:Gm17
Start:8186631
stop:8188768
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47520AT Annotation by Michelle Graham. TAIR10: malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006108GO-bp Annotation by Michelle Graham. GO Biological Process: malate metabolic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0044262GO-bp Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016615GO-mf Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0030060GO-mf Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity SoyBaseN/AISS
KOG1494 KOG NAD-dependent malate dehydrogenase JGI ISS
PTHR11540Panther MALATE AND LACTATE DEHYDROGENASE JGI ISS
PTHR11540:SF1Panther MALATE DEHYDROGENASE JGI ISS
PF00056PFAM lactate/malate dehydrogenase, NAD binding domain JGI ISS
PF02866PFAM lactate/malate dehydrogenase, alpha/beta C-terminal domain JGI ISS
UniRef100_C6TGD9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TGD9_SOYBN SoyBaseE_val: 0ISS
UniRef100_O81278UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nodule-enhanced malate dehydrogenase n=1 Tax=Glycine max RepID=O81278_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g10880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10880
ParalogEvidenceComments
Glyma05g01010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g100600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g10880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g10880
>Glyma17g10880.2   sequence type=transcript   gene model=Glyma17g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGTTTTTCTCGCCCAGATCTCATTCCCACTCCTCAATCCAAAACTTCTCATTCCAGATCTGTCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAAATTTCCTTGTCAGCAGGTGGTTTCTTGGGTTATGGATTTATTTGAGCATAAATACTACTTAGAGGACTTAGGTTGCAGATTTGTTGTAGCATCTTTACTGCTTCCAGAACTTAGGATTCAGACTTTCTATGTATCAATTCTACTTCCAGTTTTGTTAGTAGAACGGGAGGACGCTTCCATTTCTGTTCTCTAAACCGAGCTTAGGTTTTGGTCAGAAATCTTCAAAGATGTAAGCATTATAATGTAGAATTGAAAAAAAATGTAAACGTTGCTTTTTGAATAATATGGCCATTAGACCAGGTTTTGGTTTTTTGTTGAATATTTTAGTATTTCAGAAATCTCCTTTACTGATGCAGAATTTAGTTAACCATGCT
Coding sequences of Glyma17g10880
>Glyma17g10880.1   sequence type=CDS   gene model=Glyma17g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAGCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA

>Glyma17g10880.2   sequence type=CDS   gene model=Glyma17g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA
Predicted protein sequences of Glyma17g10880
>Glyma17g10880.1   sequence type=predicted peptide   gene model=Glyma17g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPAATFAIGTTGSLGQRGSSLPQSKSFGLKFNSLNHLKSFCGLKAMSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA*

>Glyma17g10880.2   sequence type=predicted peptide   gene model=Glyma17g10880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA*






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