SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47520 | AT | Annotation by Michelle Graham. TAIR10: malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malate metabolic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0044262 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0010319 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: stromule | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016615 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0030060 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity | SoyBase | N/A | ISS |
| KOG1494 | KOG | NAD-dependent malate dehydrogenase | JGI | ISS | |
| PTHR11540 | Panther | MALATE AND LACTATE DEHYDROGENASE | JGI | ISS | |
| PTHR11540:SF1 | Panther | MALATE DEHYDROGENASE | JGI | ISS | |
| PF00056 | PFAM | lactate/malate dehydrogenase, NAD binding domain | JGI | ISS | |
| PF02866 | PFAM | lactate/malate dehydrogenase, alpha/beta C-terminal domain | JGI | ISS | |
| UniRef100_C6TGD9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TGD9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O81278 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nodule-enhanced malate dehydrogenase n=1 Tax=Glycine max RepID=O81278_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g10880 not represented in the dataset |
Glyma17g10880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g01010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g100600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g10880.2 sequence type=transcript gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACGTTTTTCTCGCCCAGATCTCATTCCCACTCCTCAATCCAAAACTTCTCATTCCAGATCTGTCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAAATTTCCTTGTCAGCAGGTGGTTTCTTGGGTTATGGATTTATTTGAGCATAAATACTACTTAGAGGACTTAGGTTGCAGATTTGTTGTAGCATCTTTACTGCTTCCAGAACTTAGGATTCAGACTTTCTATGTATCAATTCTACTTCCAGTTTTGTTAGTAGAACGGGAGGACGCTTCCATTTCTGTTCTCTAAACCGAGCTTAGGTTTTGGTCAGAAATCTTCAAAGATGTAAGCATTATAATGTAGAATTGAAAAAAAATGTAAACGTTGCTTTTTGAATAATATGGCCATTAGACCAGGTTTTGGTTTTTTGTTGAATATTTTAGTATTTCAGAAATCTCCTTTACTGATGCAGAATTTAGTTAACCATGCT
>Glyma17g10880.1 sequence type=CDS gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA >Glyma17g10880.2 sequence type=CDS gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA
>Glyma17g10880.1 sequence type=predicted peptide gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAPAATFAIGTTGSLGQRGSSLPQSKSFGLKFNSLNHLKSFCGLKAMSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA* >Glyma17g10880.2 sequence type=predicted peptide gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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