Report for Sequence Feature Glyma17g10880
Feature Type: gene_model
Chromosome: Gm17
Start: 8186631
stop: 8188768
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g10880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G47520 AT
Annotation by Michelle Graham. TAIR10: malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006108 GO-bp
Annotation by Michelle Graham. GO Biological Process: malate metabolic process
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0044262 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0010319 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: stromule
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016615 GO-mf
Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity
SoyBase N/A ISS
GO:0016616 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
GO:0030060 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity
SoyBase N/A ISS
KOG1494
KOG
NAD-dependent malate dehydrogenase
JGI ISS
PTHR11540 Panther
MALATE AND LACTATE DEHYDROGENASE
JGI ISS
PTHR11540:SF1 Panther
MALATE DEHYDROGENASE
JGI ISS
PF00056 PFAM
lactate/malate dehydrogenase, NAD binding domain
JGI ISS
PF02866 PFAM
lactate/malate dehydrogenase, alpha/beta C-terminal domain
JGI ISS
UniRef100_C6TGD9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TGD9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O81278 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nodule-enhanced malate dehydrogenase n=1 Tax=Glycine max RepID=O81278_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g10880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g10880
Paralog Evidence Comments
Glyma05g01010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g10880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g100600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g10880
Transcripts of Glyma17g10880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10880.2 sequence type=transcript gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACGTTTTTCTCGCCCAGATCTCATTCCCACTCCTCAATCCAAAACTTCTCATTCCAGATCTGTCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAAATTTCCTTGTCAGCAGGTGGTTTCTTGGGTTATGGATTTATTTGAGCATAAATACTACTTAGAGGACTTAGGTTGCAGATTTGTTGTAGCATCTTTACTGCTTCCAGAACTTAGGATTCAGACTTTCTATGTATCAATTCTACTTCCAGTTTTGTTAGTAGAACGGGAGGACGCTTCCATTTCTGTTCTCTAAACCGAGCTTAGGTTTTGGTCAGAAATCTTCAAAGATGTAAGCATTATAATGTAGAATTGAAAAAAAATGTAAACGTTGCTTTTTGAATAATATGGCCATTAGACCAGGTTTTGGTTTTTTGTTGAATATTTTAGTATTTCAGAAATCTCCTTTACTGATGCAGAATTTAGTTAACCATGCT
Coding sequences of Glyma17g10880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10880.1 sequence type=CDS gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCAGCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA
>Glyma17g10880.2 sequence type=CDS gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA
Predicted protein sequences of Glyma17g10880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g10880.1 sequence type=predicted peptide gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAAPAATFAIGTTGSLGQRGSSLPQSKSFGLKFNSLNHLKSFCGLKAMSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA*
>Glyma17g10880.2 sequence type=predicted peptide gene model=Glyma17g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQNAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA*