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Report for Sequence Feature Glyma17g10873

Feature Type:gene_model
Chromosome:Gm17
Start:8183662
stop:8185634
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10873
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47530AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:17517382-17519157 REVERSE LENGTH=591 SoyBaseE_val: 5.00E-167ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF97Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_D7LNE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LNE6_ARALL SoyBaseE_val: 2.00E-166ISS
UniRef100_UPI000233EAE0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EAE0 related cluster n=1 Tax=unknown RepID=UPI000233EAE0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g10873
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10873 not represented in the dataset
Glyma17g10873 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10873
ParalogEvidenceComments
Glyma05g01020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10873 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g10873
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g10873
>Glyma17g10873.1   sequence type=CDS   gene model=Glyma17g10873   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCTATTACAACACCATGATCAGGGCGTGCTCCATGAGTGATTCACCGCAAAAGGGTCTTCTTTTATATCGGGATATGAGAAGACGAGGCATTGCTGCAGACCCTTTATCTTCTTCCTTTGTTGTTAAGTCTTGTATAAGAGGTGGTGATGCGTGTAAGGTGTTTGATGAGATGCCTCCGAGGGACACTGTTGCTTGGAATGTGATGATCTCTTGCTGTATTCGAAATAATAGGACTCGGGATGCTTTGAGTTTGTTTGATGTTTTACAGAATTCGAGCTATAAATGTGAGCCTGATGATGTTACCTGTTTGCTTCTTCTTCAGGCTTGTGCTCATTTGTATGCCTTGGAATTTGGAGAACGGATTCATGGTTATATGATGGAGCATGGTTATGGGGGTGCTCTCAATTTATCTAATGCTCTCATATCTATGTATTCGCGTGCAATGATCTCTGGTTTGGCAATGAATGGATATGGGAGAGAAGCTATCGAATCATTTGAGGAGATGCTGAGAATTGGCATTCGGCCTGATGATCAGACACTCACGGGTGTCCTTTCTGCTTGCAGTTATTCTGGAATGCTTATTATGTCAATGGTGGAGAAGCCAGACTCCACAACGTGGAGGACCTTGCTTGGTGCTTGCAGAATTCATGGCCATGTTACACTTGGTGAACGAGTAATTGGACATTTGATTGAATTGAAAGCTCAAGAAGCTGGGGATCATGTAGCAGAAGTGAGAAAATTGATGAAAAATAAATCAATCCAAACCACACCTGGTTGTAGCACAATTGAACTGAAAGGAGTAGTACATGAGTTTGTTGTGGACGACGTTTCACATACTAGAAACCATGAGATTTACGAGACACTGGATGAGATTAATCATCAGCTGAGGATTGCTGGCTATGTTGTTGAACTTTCATCTGAGTTACATAAGATGGATGACAAAGAAAAGGGGTATGTGCTCTCTCATCACAGTGAAAAATTGGCTATTGCTTTTGGGGTTCTTGCTACTCCACCTGGCACAACACTGAGAGTGGCTAATAATCTCCGCATATGTGTTGATTGCTTCAATTTTCTGAAACATTTTTCTGGGGTTTACAACGGTGATGTAATTCTTAGGGACCATAATCGGTTTCACCACTTCAGGGGAGGGTGCTGCTCGTGTAGCAACTATTGGTAG
Predicted protein sequences of Glyma17g10873
>Glyma17g10873.1   sequence type=predicted peptide   gene model=Glyma17g10873   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSYYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLKHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW*






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