Glyma17g10840 - SoyBase

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Report for Sequence Feature Glyma17g10840

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8169403
stop:	8172175
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74680	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr1:28059528-28060984 FORWARD LENGTH=461	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF30	Panther		JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_B9RLZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RLZ1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EADD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EADD related cluster n=1 Tax=unknown RepID=UPI000233EADD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10840

Paralog	Evidence	Comments
Glyma05g01051	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g100100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10840

Limit To All Plant Sequences

>Glyma17g10840.1   sequence type=CDS   gene model=Glyma17g10840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGACAAGAACATGGTTCCCTCAAGATTTATATTTTGTGTAATTGTCATTGCTGTGTTCCTTTTGGTGCTGTCTTCCTTTTTCCTCATCCACTTGAGCAATCACTCATTCATTCCTAGATCAGTTTCGGAACTTGTTCTTGTTAACAACACATCCCTTGATTTCAAACCCAATTTCAAGAGGGAACAAGTTCAACCACAAAGCTGTCAATTTTCCAATTCTAGCCACAAACCAAGTTCCCCAAGACAGCAGAGGAAGATACCATGCGATCCAACCAATGCTCTCTTAAGGGTGTTCATGTATGACTTGCCTCCAGAGTTTCACTTTGGGCTATTGGATTGGAAAGGGAATGTGAACCAAACATGGCCTAATGTGAATAACCCAAAACACATTCCACCTTATCCAGGTGGCCTTAATTTGCAGCATAGTGTGGAATACTGGCTCACCCTTGATCTTCTGTCCTCAAACATCGCGGAAAATTTTCGGCCTTGCACTGCAATTAGAGTGCAGAATTCGAGACAAGCAGATGTGGTTTTTGTGCCATTTTTCTCATCTTTGAGTTACAACCGGCATTCCAAAATCCATGGGAAGGAAAAAGTTAGTGTTAACAGAATGTTGCAACAGAGATTGGTACAGTTACTAATGGAGAGGGAAGAATGGAAACGTTCTGGAGGGAGGGATCATGTGATTGTGGCACACCATCCTAACAGCATTCTGCGTGCAAGAAGAAAGTTGGGCTCTGCCATGCTTGTGCTTGCAGATTTTGGAAGATACCCTTCTCAATTAGCAAACATTAAGAAGGATATAATTGCTCCATATAGACATCTAGTAAGTACTGTACCAAGAGCTGAGTCAGCTTCATATGAGGAACGTTCTACACTTCTATATTTCCAGGGGGCAATATATAGGAAAGATGGAGGAGCTATTCGCCAAAAGCTATATTACCTCCTGAAAGATGAGAAAGATGTGCATTTTGCATTTGGAAGCATCAGAAAAAATGGGATTAATCAAGCAAGCCAAGGCATGGCCTTATCCAAATTTTGCCTTAACGTTGCTGGAGATACCCCATCCTCGAATCGCCTCTTTGATGCCATTGTGAGCCACTGTGTTCCTGTGATCATTAGTGACGAAATTGAGCTACCATTTGAAGATGTTTTGGACTACTCAGAATTCGGCTTGTTTGTCCATGCCTCGGATGCTGTAAGGAAAGGCTACCTGCTCAATCTCCTTCGTTCAATCAAGCCAGAGAAATGGACCCAGATGTGGGAAAGGCTAAAGGATATTACACAGCACTTTGAGTATCAATATCCAAGCCAGCCTGGGGATGCAGTGAATATGATTTGGGAGGAAGTTGCACATAAGATATCTTCATTACAATTCAATTTGCACAGGAAAAACAGATACCAGAGACCTTAG

Predicted protein sequences of Glyma17g10840

Limit To All Plant Sequences

>Glyma17g10840.1   sequence type=predicted peptide   gene model=Glyma17g10840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDKNMVPSRFIFCVIVIAVFLLVLSSFFLIHLSNHSFIPRSVSELVLVNNTSLDFKPNFKREQVQPQSCQFSNSSHKPSSPRQQRKIPCDPTNALLRVFMYDLPPEFHFGLLDWKGNVNQTWPNVNNPKHIPPYPGGLNLQHSVEYWLTLDLLSSNIAENFRPCTAIRVQNSRQADVVFVPFFSSLSYNRHSKIHGKEKVSVNRMLQQRLVQLLMEREEWKRSGGRDHVIVAHHPNSILRARRKLGSAMLVLADFGRYPSQLANIKKDIIAPYRHLVSTVPRAESASYEERSTLLYFQGAIYRKDGGAIRQKLYYLLKDEKDVHFAFGSIRKNGINQASQGMALSKFCLNVAGDTPSSNRLFDAIVSHCVPVIISDEIELPFEDVLDYSEFGLFVHASDAVRKGYLLNLLRSIKPEKWTQMWERLKDITQHFEYQYPSQPGDAVNMIWEEVAHKISSLQFNLHRKNRYQRP*

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