Glyma17g10801 - SoyBase

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Report for Sequence Feature Glyma17g10801

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8115945
stop:	8117867
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10801

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74630	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:28030521-28032452 FORWARD LENGTH=643	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF76	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JQZ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7JQZ9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E984	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E984 related cluster n=1 Tax=unknown RepID=UPI000233E984	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10801

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10801 not represented in the dataset	Glyma17g10801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g10801 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g099500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10801

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10801

Limit To All Plant Sequences

>Glyma17g10801.1   sequence type=CDS   gene model=Glyma17g10801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCATGGGTTTCACTGCTGAGCAAGTGCAGCAGCCTGAAACCCACGAAGCAAATCCACGCCCAAATCTGCAAAACCGGTCTTCACACAGACCCTTTGGTCTTCGGCAAGCTCCTTCTCCACTGCGCCATCACCATCTCCGACGCTCTCCACTACGCTCTCCGTCTCTTCCACCACTTCCCCAACCCCGACACCTTCATGCACAACACCCTCATTCGCTCCCTCTCCCTCTCCCAAACCCCTCTTTCCTCCCTCCACCCCTTCATCCAACTCCGCCGCCAACCCACCCTCTCCCCTGACAGTTTCACTTTCGCCTTCGCCCTCAAAGCGGTCGCCAACTCCCGCCACCTCAGACCCGGCATTCAGCTGCATTCTCAAGCCTTCCGCCACGGCTTCGATGCCCATATCTTTGTCGGGACAACGTTGATCAGCATGTATGCAGAATGTGGTGACTCCGGTTCTGCGCGACGGGTGTTCGATGAAATGTCTGAACCAAATGTGGTCACGTGGAATGCTGTTCTTACCGCAGCTTTCAGGTGTGGCGACGTGGAAGGCGCGCAGGATGTGTTTGGGTGCATGCCCGTTCGGAATTTGACCTCGTGGAATGGCATGCTTGCTGGTTATGCCAAGGCAGGTGAGCTTGGATTGGCAAGGAGAGTTTTTTATGAAATGCCTCTGAGAGATGAGGTTTCTTGGAGCACTATGATTGTTGGGGAGTTGCTGCGCGAGGAAATTCGGACAAATGAGGTGAGCCTCACCGGGGTGCTGTCTGCTTGTGCACAGGCTGGGGCGTTTGAGTTTGGGAAGATTTTACATGGGTTTGTGGAGAAAGCTGGGTTTCTTTATGTTGGTTCTGTGAATAATGCTCTCATAGATACCTACTCCAAGTGTGGGAATGTGGCTATGGCTAGGTTGGTCTTTCAGAATATGCCAGTGGCGAGAAGCATTGTTTCTTGGACATCAATAATAGCGGGACTTGCGATGCATGGTTGTGGAGAAGAGGCAATACAGCTTTTTCATGAGATGGAAGAGTCTGGAGTTAGGCCTGATGGTATTACTTTTATATCACTACTGTATGCTTGTAGCCATAGTGGCTTGGTTGAGGAAGGGTGTGGTTTATTTTCTAAGATGAAGAATTTGTATGGTATTGAACCTGCCATTGAGCATTATGGTTGCATGGTTGATCTGTATGGTCGAGCTGCTAGGTTGCAGAAGGCCTATGAGTTTATATGTGAAATGCCAGTTTCTCCTAATGCAATCATTTGGAGGACTCTCCTCGGGGCTTGTAGCATTCATGGTAATATTGAAATGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAGACAACTCTGGTGATCATGTACTGCTCTCAAATGTTTATGCCGTTGCAGGGAAATGGAAGGATGTTTCCAGCATAAGAAGAACGATGACTGAACATAGCATGAAAAAAACTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCATTTATGGTTTTGTTGCTGGTGAAAAGCCTAATGAGGTTACGGAGGAGGCTCATGAAAAACTGAGGGAAATAATGTTGAGACTCAGAACAGAAGCAGGTTATGCACCACAGCTAAGGAGTGTCCTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTTTCTAAGCACAGTGAGAAGCTTGCTGCTGCTTTTGGAATAGCAAAACTTCCCAAGGGAAGGATTTTAAGAATTGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTCGTTCAAAGATGGATTTTGTTCTTGCAGAGATTACTGGTGA

Predicted protein sequences of Glyma17g10801

Limit To All Plant Sequences

>Glyma17g10801.1   sequence type=predicted peptide   gene model=Glyma17g10801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAWVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW*

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