Report for Sequence Feature Glyma17g10790
Feature Type: gene_model
Chromosome: Gm17
Start: 8111340
stop: 8115803
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g10790
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G74580 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:28020777-28023068 FORWARD LENGTH=763
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF196 Panther
PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_B9R997 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R997_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MTT2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTT2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g10790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma17g10790 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g099400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g10790
Transcripts of Glyma17g10790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10790.3 sequence type=transcript gene model=Glyma17g10790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CACCTTTTAGTTTTTTCTTTTTCACATCAATTTCCTTCCTTCCCGTCTCATTCTTCATGCTTTGCAAGCAAAGTGTTGGTTTCCATGAATTCAAACGTACCATAACGTTTCTTCGCCTACCAGTCGCAGAAGAGTTAAAATCATGAAAACGATTTCTGACTGAGAGAATCAAATTCATTCTCTTGATTTGATTTCATTACGACCGAATGTGGTAATCAAATTTCTTCTTTCTCTGTAAATTTTGCAATGAGTCGTACGTTGCTTCCAAAGCACGTTGCCGCGGTGGTGAAGATCCAAACGGACCCTCTGAAAGCGCTCGAGATGTTCAACTCGGCTAAAAGCGAGGACGGCTTCAAGCACACGGCATCGACGTACAAATGCATAGTCCAGAAGCTCGGCCACCACGGCGAGTTCGAGGAGATGGAGAAGCTGCTTTCGGAGATGAGAGAGAACGTCAACAACGCGCTTCTGGAAGGCGCGTACATCGAAGCCATGAAAAACTACGGCAGAAAAGGGAAGGTTCAGGAAGCAGTGGACACGTTCGAACGCATGGACTTCTACAACTGCGACCCCTCTGTTCACTCCCACAACGCCATCATGAACATTCTCGTCGAGTTCGGGTACCACAACCAAGCACACAAAGTGTACATGAGAATGAGAGACAGAGGGGTGCAATCTGATGTATACACCTACACCATAAGGATCAAGTCCTTCTGTAAAACCGCGAGGCCTTATGCTGCTCTCAGACTCCTTCGCAACATGCCCGAACTCGGGTGTGATTCCAATGCTGTGGCCTATTGCACTGTGGTTGCTGGGCTGTACGACTCCGGTGAGCATGATCATGCACGCGAGCTGTTCGATGAAATGCTCGCGCGGTGTTTGTGTCCCGATGTTGTCGCGTTTAATAAGCTCGTGCACGTGCTTTGCAAGAAGGGTCTTGTTTTCGAGAGTGAGAGGCTTCTCGGCAAGGTTTTGAAGAGGGGGGTTTGTCCGAATTTGTTTACCTTTAATATCTTCGTTCAAGGGCTTTGTAGGGAGGGTGCTCTTGATAGGGCTGTTAGGTTGTTGGCTAGTGTGTCGAGGGAGGGACTGAGTCTTGATGTTGTCACGTATAATATACTTATATGTGGGCTGTGTAGGAATTCACGGGTTGTGGAGGCTGAGGAGTACTTGCGGAAAATGGTGAATGGTGGATTTGAGCCTGATGATTTAACCTACAATAGTATTATTGATGGATACTGCAAGAAGGGGATGGTACAAGATGCAAATCGGGTGCTGAAGGATGCAGTTTTTAAGGGTTTTAAGCCTGATGAGTTTACTTATTGTTCCTTAATTAACGGGTTTTGTAAGGATGGTGACCCTGATCGAGCAATGGCGGTCTTTAAGGATGGACTGGGAAAAGGTTTGAGGCCAAGCATTGTTCTTTACAATACCTTGATTAAAGGGTTGTCTCAGCAGGGTCTTATTTTGCCAGCCTTGCAATTGATGAATGAGATGGCAGAAAATGGTTGTCTTCCCAATATATGGACTTATAATTTAGTTATAAATGGCTTGTGCAAGATGGGTTGTGTTTCTGATGCTAGTCATCTTGTAGATGATGCTATTGCCAAAGGGTGTCCACCGGACATATTTACCTATAACACTTTGATTGATGGCTATTGTAAACAGTTGAAGTTAGACAGTGCAACTGAGATGGTAAATAGAATGTGGAGTCAGGGCATGACTCCTGATGTTATCACATACAACACTTTGTTGAATGGGCTCTGCAAGGCTGGAAAGTCTGAAGAAGTAATGGAGATTTTCAAGGCAATGGAGGAGAAGGGATGCACTCCAAACATAATTACATACAACATTATTGTAGACAGCCTTTGCAAAGCTAAGAAAGTAAATGAAGCTGTAGATTTGCTTGGGGAAATGAAAAGCAAGGGTTTGAAACCTGATGTTGTTAGTTTTGGCACATTGTTCACTGGCTTCTGTAAGATTGGGGATATTGATGGTGCATACCAGTTATTTAGAAGGATGGAAAAACAATACGATGTCTGTCATACAACAGCAACATACAACATCATAGTCAGTGCATTTTCTGAACAGCTCAACATGAATATGGCCATGAAGCTCTTTTCTGTGATGAAGAACAGTGGCTGTGACCCAGACAACTATACTTATCGGGTTGTGATAGATGGCTTTTGCAAAATGGGAAATATTACTCAAGGATACAAATTTCTTTTGGAAAATATGGAAAAGAGGTTTATACCATCACTGACGACATTTGGACGGGTTTTAAATTGTCTTTGTGTAAAGGACAAGGTTCATGAAGCAGTTGGTATCATCCACCTTATGTTACAAAAGGGTATCGTGCCAGAGACTGTAAATACAATTTTTGAAGCTGATAAAAAGGTTGTAGCGGCACCTAAGATTCTTGTAGAAGATTTGTTGAAAAAGGGCCATATAGCTTATTACACTTATGAACTACTATATGATGGTATTAGAGATAAAAAGATACTTAAAAAAAGACTCCCAACTGTGAATTCTCTTCATCGAGGGGCCAGTTCGTCAGCTGTTGATTAGAAGATAATGTCTTTGGAAAGTGATCATTCATGACCATCTGCTCAGTTCTAACTTCCAAAGATGTTTGAAGGTTCCAGTAGATACCTGTTATATAATGCTGACTTTCATGGTTTTTCTCCCAGATTGCATGTCATGCTCAGAAATTTTGGTGCAGGACGAAGTATGCAAGTTGCAATGCTTACCTACCACACTTGAGTCTTCGTGCCAGATTTTACTTTCACAGTGGTACATTTGAAGAATGAGGAATAATGATGCTCACCTGCATACTCAAGTCCTCAATAAACAAGAAAGAAAGATAGCTGCTAATCTGTAGCATGAAAATTATAATCCAAATTGTACTTGTATATCTAAAGGTAAGCTCCTTTCGAGTTTTGACAGATGTACTGTGTGTAGTCAATGATGGTGGAATTTTAGGTTACCTCCCCTGTCACACATGATCCCAAAAACTGTTTCTTCAGGGAAATCAGACAAAAGAACCCATATACAGGATTTGCAACATCTTGATACTACTTTCAGATTGTTATGAATGTTCTGCTTATTCAGTGTGGCGTAATTTAAGTGTGGGTAATGAAGTCCCATACATTTGTCAGGAAGAAAGATTCATATAATCATATGCCCCTGAGACCTATCTGCTATGATTTATGAAGCAGAATAATTTTAGTTTCATCGTTGAAGAATATCCCGTGAACTATATTGTGAAACGATAAAGCTAAAGAGGAATAGAATTATCTTGCAGAGATGATATACTCTGATAAGAACATTGCTAACTTTCATTATTCTCCACTGGACTCCTCTTTGTTTACCAAATGAGAGAGTAAAGTTGGATGCCTTGCAGTGCATACCATCTCTTTTGCTAGCAGTTATGTTGACAAATCATGCGAACAATTGTGAACAAATATTTTTTATGAATGAAATTTAAGGAGAGGAGATATGACTTCTTAATCTAAGGCGGGGAGTTGAAAGAGAACGTAGAAAGAGATTTACATTTGCCTCACTTGAAGTGAGTGGAAGCTCGAACAATGACTTGTTAAATCAACTCCTTGGTTTAAAATTAAAATATAAAAACTTTCATTGGCATAAAAAAATTATATTTTCATTTTGTTTATTTTATAACAAGTC
Coding sequences of Glyma17g10790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10790.2 sequence type=CDS gene model=Glyma17g10790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTCGTACGTTGCTTCCAAAGCACGTTGCCGCGGTGGTGAAGATCCAAACGGACCCTCTGAAAGCGCTCGAGATGTTCAACTCGGCTAAAAGCGAGGACGGCTTCAAGCACACGGCATCGACGTACAAATGCATAGTCCAGAAGCTCGGCCACCACGGCGAGTTCGAGGAGATGGAGAAGCTGCTTTCGGAGATGAGAGAGAACGTCAACAACGCGCTTCTGGAAGGCGCGTACATCGAAGCCATGAAAAACTACGGCAGAAAAGGGAAGGTTCAGGAAGCAGTGGACACGTTCGAACGCATGGACTTCTACAACTGCGACCCCTCTGTTCACTCCCACAACGCCATCATGAACATTCTCGTCGAGTTCGGGTACCACAACCAAGCACACAAAGTGTACATGAGAATGAGAGACAGAGGGGTGCAATCTGATGTATACACCTACACCATAAGGATCAAGTCCTTCTGTAAAACCGCGAGGCCTTATGCTGCTCTCAGACTCCTTCGCAACATGCCCGAACTCGGGTGTGATTCCAATGCTGTGGCCTATTGCACTGTGGTTGCTGGGCTGTACGACTCCGGTGAGCATGATCATGCACGCGAGCTGTTCGATGAAATGCTCGCGCGGTGTTTGTGTCCCGATGTTGTCGCGTTTAATAAGCTCGTGCACGTGCTTTGCAAGAAGGGTCTTGTTTTCGAGAGTGAGAGGCTTCTCGGCAAGGTTTTGAAGAGGGGGGTTTGTCCGAATTTGTTTACCTTTAATATCTTCGTTCAAGGGCTTTGTAGGGAGGGTGCTCTTGATAGGGCTGTTAGGTTGTTGGCTAGTGTGTCGAGGGAGGGACTGAGTCTTGATGTTGTCACGTATAATATACTTATATGTGGGCTGTGTAGGAATTCACGGGTTGTGGAGGCTGAGGAGTACTTGCGGAAAATGGTGAATGGTGGATTTGAGCCTGATGATTTAACCTACAATAGTATTATTGATGGATACTGCAAGAAGGGGATGGTACAAGATGCAAATCGGGTGCTGAAGGATGCAGTTTTTAAGGGTTTTAAGCCTGATGAGTTTACTTATTGTTCCTTAATTAACGGGTTTTGTAAGGATGGTGACCCTGATCGAGCAATGGCGGTCTTTAAGGATGGACTGGGAAAAGGTTTGAGGCCAAGCATTGTTCTTTACAATACCTTGATTAAAGGGTTGTCTCAGCAGGGTCTTATTTTGCCAGCCTTGCAATTGATGAATGAGATGGCAGAAAATGGTTGTCTTCCCAATATATGGACTTATAATTTAGTTATAAATGGCTTGTGCAAGATGGGTTGTGTTTCTGATGCTAGTCATCTTGTAGATGATGCTATTGCCAAAGGGTGTCCACCGGACATATTTACCTATAACACTTTGATTGATGGCTATTGTAAACAGTTGAAGTTAGACAGTGCAACTGAGATGGTAAATAGAATGTGGAGTCAGGGCATGACTCCTGATGTTATCACATACAACACTTTGTTGAATGGGCTCTGCAAGGCTGGAAAGTCTGAAGAAGTAATGGAGATTTTCAAGGCAATGGAGGAGAAGGGATGCACTCCAAACATAATTACATACAACATTATTGTAGACAGCCTTTGCAAAGCTAAGAAAGTAAATGAAGCTGTAGATTTGCTTGGGGAAATGAAAAGCAAGGGTTTGAAACCTGATGTTGTTAGTTTTGGCACATTGTTCACTGGCTTCTGTAAGATTGGGGATATTGATGGTGCATACCAGTTATTTAGAAGGATGGAAAAACAATACGATGTCTGTCATACAACAGCAACATACAACATCATAGTCAGTGCATTTTCTGAACAGCTCAACATGAATATGGCCATGAAGCTCTTTTCTGTGATGAAGAACAGTGGCTGTGACCCAGACAACTATACTTATCGGGTTGTGATAGATGGCTTTTGCAAAATGGGAAATATTACTCAAGGATACAAATTTCTTTTGGAAAATATGGAAAAGAGGTTTATACCATCACTGACGACATTTGGACGGGTTTTAAATTGTCTTTGTGTAAAGGACAAGGTTCATGAAGCAGTTGGTATCATCCACCTTATGTTACAAAAGGGTATCGTGCCAGAGACTGTAAATACAATTTTTGAAGCTGATAAAAAGGTTGTAGCGGCACCTAAGATTCTTGTAGAAGATTTGTTGAAAAAGGGCCATATAGCTTATTACACTTATGAACTACTATATGATGGTATTAGAGATAAAAAGATACTTAAAAAAAGACTCCCAACTGTGAATTCTCTTCATCGAGGGGCCAGTTCGTCAGCTGTTGATTAG
>Glyma17g10790.3 sequence type=CDS gene model=Glyma17g10790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTCGTACGTTGCTTCCAAAGCACGTTGCCGCGGTGGTGAAGATCCAAACGGACCCTCTGAAAGCGCTCGAGATGTTCAACTCGGCTAAAAGCGAGGACGGCTTCAAGCACACGGCATCGACGTACAAATGCATAGTCCAGAAGCTCGGCCACCACGGCGAGTTCGAGGAGATGGAGAAGCTGCTTTCGGAGATGAGAGAGAACGTCAACAACGCGCTTCTGGAAGGCGCGTACATCGAAGCCATGAAAAACTACGGCAGAAAAGGGAAGGTTCAGGAAGCAGTGGACACGTTCGAACGCATGGACTTCTACAACTGCGACCCCTCTGTTCACTCCCACAACGCCATCATGAACATTCTCGTCGAGTTCGGGTACCACAACCAAGCACACAAAGTGTACATGAGAATGAGAGACAGAGGGGTGCAATCTGATGTATACACCTACACCATAAGGATCAAGTCCTTCTGTAAAACCGCGAGGCCTTATGCTGCTCTCAGACTCCTTCGCAACATGCCCGAACTCGGGTGTGATTCCAATGCTGTGGCCTATTGCACTGTGGTTGCTGGGCTGTACGACTCCGGTGAGCATGATCATGCACGCGAGCTGTTCGATGAAATGCTCGCGCGGTGTTTGTGTCCCGATGTTGTCGCGTTTAATAAGCTCGTGCACGTGCTTTGCAAGAAGGGTCTTGTTTTCGAGAGTGAGAGGCTTCTCGGCAAGGTTTTGAAGAGGGGGGTTTGTCCGAATTTGTTTACCTTTAATATCTTCGTTCAAGGGCTTTGTAGGGAGGGTGCTCTTGATAGGGCTGTTAGGTTGTTGGCTAGTGTGTCGAGGGAGGGACTGAGTCTTGATGTTGTCACGTATAATATACTTATATGTGGGCTGTGTAGGAATTCACGGGTTGTGGAGGCTGAGGAGTACTTGCGGAAAATGGTGAATGGTGGATTTGAGCCTGATGATTTAACCTACAATAGTATTATTGATGGATACTGCAAGAAGGGGATGGTACAAGATGCAAATCGGGTGCTGAAGGATGCAGTTTTTAAGGGTTTTAAGCCTGATGAGTTTACTTATTGTTCCTTAATTAACGGGTTTTGTAAGGATGGTGACCCTGATCGAGCAATGGCGGTCTTTAAGGATGGACTGGGAAAAGGTTTGAGGCCAAGCATTGTTCTTTACAATACCTTGATTAAAGGGTTGTCTCAGCAGGGTCTTATTTTGCCAGCCTTGCAATTGATGAATGAGATGGCAGAAAATGGTTGTCTTCCCAATATATGGACTTATAATTTAGTTATAAATGGCTTGTGCAAGATGGGTTGTGTTTCTGATGCTAGTCATCTTGTAGATGATGCTATTGCCAAAGGGTGTCCACCGGACATATTTACCTATAACACTTTGATTGATGGCTATTGTAAACAGTTGAAGTTAGACAGTGCAACTGAGATGGTAAATAGAATGTGGAGTCAGGGCATGACTCCTGATGTTATCACATACAACACTTTGTTGAATGGGCTCTGCAAGGCTGGAAAGTCTGAAGAAGTAATGGAGATTTTCAAGGCAATGGAGGAGAAGGGATGCACTCCAAACATAATTACATACAACATTATTGTAGACAGCCTTTGCAAAGCTAAGAAAGTAAATGAAGCTGTAGATTTGCTTGGGGAAATGAAAAGCAAGGGTTTGAAACCTGATGTTGTTAGTTTTGGCACATTGTTCACTGGCTTCTGTAAGATTGGGGATATTGATGGTGCATACCAGTTATTTAGAAGGATGGAAAAACAATACGATGTCTGTCATACAACAGCAACATACAACATCATAGTCAGTGCATTTTCTGAACAGCTCAACATGAATATGGCCATGAAGCTCTTTTCTGTGATGAAGAACAGTGGCTGTGACCCAGACAACTATACTTATCGGGTTGTGATAGATGGCTTTTGCAAAATGGGAAATATTACTCAAGGATACAAATTTCTTTTGGAAAATATGGAAAAGAGGTTTATACCATCACTGACGACATTTGGACGGGTTTTAAATTGTCTTTGTGTAAAGGACAAGGTTCATGAAGCAGTTGGTATCATCCACCTTATGTTACAAAAGGGTATCGTGCCAGAGACTGTAAATACAATTTTTGAAGCTGATAAAAAGGTTGTAGCGGCACCTAAGATTCTTGTAGAAGATTTGTTGAAAAAGGGCCATATAGCTTATTACACTTATGAACTACTATATGATGGTATTAGAGATAAAAAGATACTTAAAAAAAGACTCCCAACTGTGAATTCTCTTCATCGAGGGGCCAGTTCGTCAGCTGTTGATTAG
Predicted protein sequences of Glyma17g10790
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g10790.2 sequence type=predicted peptide gene model=Glyma17g10790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRTLLPKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRLLASVSREGLSLDVVTYNILICGLCRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGHIAYYTYELLYDGIRDKKILKKRLPTVNSLHRGASSSAVD*
>Glyma17g10790.3 sequence type=predicted peptide gene model=Glyma17g10790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRTLLPKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRLLASVSREGLSLDVVTYNILICGLCRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGHIAYYTYELLYDGIRDKKILKKRLPTVNSLHRGASSSAVD*