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Report for Sequence Feature Glyma17g10780

Feature Type:gene_model
Chromosome:Gm17
Start:8107582
stop:8110259
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g10780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47610AT Annotation by Michelle Graham. TAIR10: transcription regulators;zinc ion binding | chr3:17549178-17551204 FORWARD LENGTH=408 SoyBaseE_val: 2.00E-171ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2845 KOG Activating signal cointegrator 1 JGI ISS
PTHR12963Panther THYROID RECEPTOR INTERACTING PROTEIN RELATED JGI ISS
PF06221PFAM Putative zinc finger motif, C2HC5-type JGI ISS
UniRef100_G7JQZ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Activating signal cointegrator n=1 Tax=Medicago truncatula RepID=G7JQZ7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MTT1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTT1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g10780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g10780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g099300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g10780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g10780
>Glyma17g10780.1   sequence type=CDS   gene model=Glyma17g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGGCGGGGGAGTGGCTGGAGAAGGCGTTGGTGGAGTTGTGCTCCAAGATTGAAACTGGCTTGGGTTTAGGTTTGGACCAAGACATCATCAAAGGCCTCGTCTCTTACTGTGACCTTGCCGAGCCACGAGATGCCAAAGAGTACCTTGACAATATAATCGGTCAGGATGCAGGGAAAACTGTGATTGAAGAATATTTACGACGGAGAGGTTACTCAGAATCCAGCATCGGCTCAAATGTTCCAACTACCAAATTACATGCGTATGTCAAACCGCCTTCAGTTGAGACATCTGCTAGTGGAACTAAGAAATCATTTAAAACACCGAAAGTGGCAGGCCGCGGTAATCATGCAGAACCGAACAAGAATGCGAGTAGCAGTAATCAGGAAAATCAGACTCCAACTGTAGTTAGTGAATCAAAAACATCGCAAAAGGGGAACCAATTGAATTCCAAGAAGAAGAAAGCCGGGAAAGTTGTCTCACTTGCTGAGGCTGCCAAAGGATCCATTGTGTTCCAGCAGGGAAGACCATGCTCCTGTCAAGCACGTCGTCACGGGCTGGTCAGCAACTGCTTATCTTGTGGCAAAATAGTCTGTGAACAAGAAGGAGAGGGGCCTTGCCATTTTTGTGGTGCACTTGTGTTAAGAGAGGGCAGCTCGTATGCTGGTCTGGAAGAAAGTTTGCCTCCCTTGTCAGAGTCTGAGGCTGTTGCTGAAGCTTATGCAAAGAGACTGGTTGAATATGACCGAAACTCTGCAGCTCGTACAACAGTTATTGATGACCAAAGTGACTACTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGAGAAAGAACTGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGAAAGCCAAACGTAATAGAGTTGTTGTGACTTTTGATCTAGTTGGCCGCAAGGTCCTTGTAAATAAAGATGAAGCTTCAGAATTACAGTTTGAAAATAGAATATTGCGTCCTCCGGATGCAAGGGAAGTGAACCGTATCAAACCAAATCCAACTCTAACGTTTCAACCTGTTTTTGTGGACCTGGGCTTTGGTAGGAAATCCACTAAAGATAAGCAATCACATAAAGGCATAAGCAAGGGCTTGTGCTTGGAGATTACAGGGCGAGTGCAGCATGATAGAAATGACCAGAAGTATGTTATGATGGAAAACCAATTGGCAACAGCTTCAAATGAAAATGTTTGGCAAGTATCTTCAGGAAATGGAATGCACATCATGGAAGATGATGGTCAATGTTTACTGAACTATGATAAGTAA
Predicted protein sequences of Glyma17g10780
>Glyma17g10780.1   sequence type=predicted peptide   gene model=Glyma17g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESAGEWLEKALVELCSKIETGLGLGLDQDIIKGLVSYCDLAEPRDAKEYLDNIIGQDAGKTVIEEYLRRRGYSESSIGSNVPTTKLHAYVKPPSVETSASGTKKSFKTPKVAGRGNHAEPNKNASSSNQENQTPTVVSESKTSQKGNQLNSKKKKAGKVVSLAEAAKGSIVFQQGRPCSCQARRHGLVSNCLSCGKIVCEQEGEGPCHFCGALVLREGSSYAGLEESLPPLSESEAVAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDGNSWLSKEEKELLKKKQEEMEEAEKAKRNRVVVTFDLVGRKVLVNKDEASELQFENRILRPPDAREVNRIKPNPTLTFQPVFVDLGFGRKSTKDKQSHKGISKGLCLEITGRVQHDRNDQKYVMMENQLATASNENVWQVSSGNGMHIMEDDGQCLLNYDK*






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