Glyma17g10760 - SoyBase

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Report for Sequence Feature Glyma17g10760

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8081391
stop:	8084421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47620	AT	Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 \| chr3:17559004-17560473 FORWARD LENGTH=489	SoyBase	E_val: 1.00E-60	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0010229	GO-bp	Annotation by Michelle Graham. GO Biological Process: inflorescence development	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR11584	Panther	SERINE/THREONINE PROTEIN KINASE	JGI		ISS
PTHR11584:SF275	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_G7JQY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor PCF2 n=1 Tax=Medicago truncatula RepID=G7JQY3_MEDTR	SoyBase	E_val: 1.00E-150	ISS
UniRef100_UPI000233F4DC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F4DC related cluster n=1 Tax=unknown RepID=UPI000233F4DC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g10760

Paralog	Evidence	Comments
Glyma05g01131	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g10760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g099100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g10760

Limit To All Plant Sequences

>Glyma17g10760.2   sequence type=CDS   gene model=Glyma17g10760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGAGGCGACGATCTCCAGCACCACCATCGTCAGAACAACTTCCCATTCCAGCTACTTGAGAAGAAAGAAGACCAAGAAACCGCGTCATGCTCCACCTCCTCCCCTTACCCTTCCCTAGCAATCTCCGCGGAACCGAGCATGTCCAATTCCACCCGATCCAACCAGCTCTCGGCGGCCGAGGCTTCGGCGGAGGCGGCGAACAGCAAAAAGCCTCCGCCGAAGCGCACCTCGACGAAGGACCGGCACACGAAGGTGGACGGGCGCGGGCGGCGCATCCGAATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAGCTGACCCGCGAGCTGGGCCACAAGTCGGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCGGTGATCGCCGCCACTGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTGAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACAACAACGTAGAACCTTCTTCCCCGGCATAGCCCTTTCCTCCGAACACAACACCACCACCAACAACACATCAACACTTGTCAATTTCCAACAATCCAACAACCTCACCACCACCATGCTGCAGCAGCAGGCCAAGCCGGAGCTTCGCGACGGCCTACCATCTTCCTTAGACATTTCAGACACAAGAACAAACACAGAAGACCCAAGCCGCAAAAGAAGACCAACTACAGAACAACAAGACCTATCCCCCACCACGCAGCAGCAGCACCACCAAATGGGAAGCTATCTCCTTCAATCTAGTGCAGGCGCTATTCCAGCGAGCCACGCCGCCAACATATGGATGGTGGCGAATTCAAACTCGAATCAGGTCATGAGTGGCGATCCCATGTGGACCTTCCCACCGGTTAACAACAGTGCTTTGTATCGGGGCACCATGTCCAGCGGCTTGCATTTCATGAATTTTCCAACGCCCATGGCGTTGTTGCCGAGTCAGCAACTAGGTTCTGCTGGGAATATTGGTGCTGTTCATGGAGGAAGCAGTAATAATAATAATCACAATAATAATATGAATGAAGCACATTTGAGTATGCTTGCAGGGCTTAGTCCTTATCGACCTGTTATTGGCGTTTCGGAATCTCAGCCGAGTGGCTCGCAATCGCATCGAGGAGGTGCCGATGATCGACATGATAATAGCTCCAGTCACCACTCCTAG

Predicted protein sequences of Glyma17g10760

Limit To All Plant Sequences

>Glyma17g10760.2   sequence type=predicted peptide   gene model=Glyma17g10760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGGDDLQHHHRQNNFPFQLLEKKEDQETASCSTSSPYPSLAISAEPSMSNSTRSNQLSAAEASAEAANSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQQQRRTFFPGIALSSEHNTTTNNTSTLVNFQQSNNLTTTMLQQQAKPELRDGLPSSLDISDTRTNTEDPSRKRRPTTEQQDLSPTTQQQHHQMGSYLLQSSAGAIPASHAANIWMVANSNSNQVMSGDPMWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSAGNIGAVHGGSSNNNNHNNNMNEAHLSMLAGLSPYRPVIGVSESQPSGSQSHRGGADDRHDNSSSHHS*

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