Glyma17g10720 - SoyBase

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Report for Sequence Feature Glyma17g10720

Feature Type:	gene_model
Chromosome:	Gm17
Start:	8056918
stop:	8060737
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g10720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62500	AT	Annotation by Michelle Graham. TAIR10: end binding protein 1B \| chr5:25092929-25095006 FORWARD LENGTH=293	SoyBase	E_val: 2.00E-139	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0009652	GO-bp	Annotation by Michelle Graham. GO Biological Process: thigmotropism	SoyBase	N/A	ISS
GO:0009958	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive gravitropism	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005815	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule organizing center	SoyBase	N/A	ISS
GO:0005819	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: spindle	SoyBase	N/A	ISS
GO:0005874	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: microtubule	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0010005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
KOG3000	KOG	Microtubule-binding protein involved in cell cycle control	JGI		ISS
PTHR10623	Panther	MICROTUBULE-ASSOCIATED PROTEIN, RP/EB FAMILY	JGI		ISS
PF00307	PFAM	Calponin homology (CH) domain	JGI		ISS
PF03271	PFAM	EB1-like C-terminal motif	JGI		ISS
UniRef100_G7JQX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein RP/EB family member n=1 Tax=Medicago truncatula RepID=G7JQX9_MEDTR	SoyBase	E_val: 8.00E-158	ISS
UniRef100_I1MTS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MTS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g10720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g10720 not represented in the dataset	Glyma17g10720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g10720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g098700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g10720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g10720

Limit To All Plant Sequences

>Glyma17g10720.2   sequence type=transcript   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGGCCAAATAGCGTGATGAAGAAGTGAAAAGTTTGAGTGAGTACAAATTCCAAATCCCACAATTAATGCAATGCTCACTGTCACACATTCCATTTCTCTTTCTCTCTCCCGAAATAAAAATCGAAGCTTCGTTGAGACCCACTTAAGATTTTTGTCCACCCAGAATCTTCTTCTTCCCTTCCTTCAAAAACACCCACATTTTCTTCTTCTTACATTCCCATTTCTCTCTCTCTCTCTCTGGGTTATTAGCAAAAATGGCGTCGAGTATAGGCATGATGGACAGTGCCTACTTTGTCGGCAGGAACCAGATTCTGACCTGGATCAACAACAGGCTCCACCTCAATCTCTCACGCATTGAGGAGGCTGCATCTGGGGCTGTGCAATGCCAGATGATGGATATGACGTTTCCAGGGGTTGTTCCAATGCACAAGGTGAACTTTGATGCAAAGACTGAGTATGATATGATCCAGAATTACAAAATTCTGCAGGACGTGTTCAATAAGCTGAAAATTGACAAACATGTTGAAGTTAGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTCCAGTGGCTGAAACGTTACTGTGATTCCGTGAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGAAGGGTAAAGGTTGGAAAGGATCGAAATCACAAGTGCTCTGTGAAGAGCTCAAAATCATTGCAAACAAATATGATTAATTCTGGTTCAGGCAACACTCTCAGTCCTAACAGAACCTCTGGGACCAAGCAATTCAGGTCAAATGAAGCAGCAGGAGGAGTTAATTCTTCAGTAGAGATTCAGGCTTTGTCTAAAGAGATGTCTGTAGCAATTAAGAAGGTTTTGTATGCTGATGATCCAAAGGAATCAGCATTAGAAGAAGCTCAGGATTACCTTAATCAACGTTTGAATGCTGTGGAAGATGAAGCTGAAATTGAAGCCTGATTACTCCCAAAACTAGCTCGCTGGTATGCGTGATAATTTTGTCGGGCTCTTTTTCAACCAAACTCAATGATGTCTTTGATTAAAAGAGCGTTGATCCTTCCCCATGCTGTGCCATAAAGTGCCCCGCATGATGAAAGTTATTGTATGGTGCATTGATTTTCTTGTAAGCATGGATGGATACTCAGATGATATAATGACTGTTCTTTCCAACAAATAAGAGTTCAATGGTTCATGTAATAATCCTTTTCATCTATATCCAAAGGATTTATCTAAGGAACATTGTTTAACTATTCCTCATTCTTATATGGGTGTTCAAAAATTAGTTCGGTAAAAAAATAAAATCAAATTG

>Glyma17g10720.3   sequence type=transcript   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGGCCAAATAGCGTGATGAAGAAGTGAAAAGTTTGAGTGAGTACAAATTCCAAATCCCACAATTAATGCAATGCTCACTGTCACACATTCCATTTCTCTTTCTCTCTCCCGAAATAAAAATCGAAGCTTCGTTGAGACCCACTTAAGATTTTTGTCCACCCAGAATCTTCTTCTTCCCTTCCTTCAAAAACACCCACATTTTCTTCTTCTTACATTCCCATTTCTCTCTCTCTCTCTCTGGGTTATTAGCAAAAATGGCGTCGAGTATAGGCATGATGGACAGTGCCTACTTTGTCGGCAGGAACCAGATTCTGACCTGGATCAACAACAGGCTCCACCTCAATCTCTCACGCATTGAGGAGGCTGCATCTGGGGCTGTGCAATGCCAGATGATGGATATGACGTTTCCAGGGGTTGTTCCAATGCACAAGCATGTTGAAGTTAGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTCCAGTGGCTGAAACGTTACTGTGATTCCGTGAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGAAGGGTAAAGGTTGGAAAGGATCGAAATCACAAGTGCTCTGTGAAGAGCTCAAAATCATTGCAAACAAATATGATTAATTCTGGTTCAGGCAACACTCTCAGTCCTAACAGAACCTCTGGGACCAAGCAATTCAGGTCAAATGAAGCAGCAGGAGGAGTTAATTCTTCAGTAGAGATTCAGGCTTTGTCTAAAGAGATTACTGATCTCAAATCTGCAGTGGATCTCCTGGAAAAAGAAAGAGATTTCTACTTTGCAAAATTACGGGATATAGAAATTCTTTGTCAAACTCCAGAAGTGGAGAATTTCTCTATGTCTGTAGCAATTAAGAAGGTTTTGTATGCTGATGATCCAAAGGAATCAGCATTAGAAGAAGCTCAGGATTACCTTAATCAACGTTTGAATGCTGTGGAAGATGAAGCTGAAATTGAAGCCTGATTACTCCCAAAACTAGCTCGCTGGTATGCGTGATAATTTTGTCGGGCTCTTTTTCAACCAAACTCAATGATGTCTTTGATTAAAAGAGCGTTGATCCTTCCCCATGCTGTGCCATAAAGTGCCCCGCATGATGAAAGTTATTGTATGGTGCATTGATTTTCTTGTAAGCATGGATGGATACTCAGATGATATAATGACTGTTCTTTCCAACAAATAAGAGTTCAATGGTTCATGTAATAATCCTTTTCATCTATATCCAAAGGATTTATCTAAGGAACATTGTTTAACTATTCCTCATTCTTATATGGGTGTTCAAAAATTAGTTCGGTAAAAAAATAAAATCAAATTG

Coding sequences of Glyma17g10720

Limit To All Plant Sequences

>Glyma17g10720.1   sequence type=CDS   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGTATAGGCATGATGGACAGTGCCTACTTTGTCGGCAGGAACCAGATTCTGACCTGGATCAACAACAGGCTCCACCTCAATCTCTCACGCATTGAGGAGGCTGCATCTGGGGCTGTGCAATGCCAGATGATGGATATGACGTTTCCAGGGGTTGTTCCAATGCACAAGGTGAACTTTGATGCAAAGACTGAGTATGATATGATCCAGAATTACAAAATTCTGCAGGACGTGTTCAATAAGCTGAAAATTGACAAACATGTTGAAGTTAGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTCCAGTGGCTGAAACGTTACTGTGATTCCGTGAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGAAGGGTAAAGGTTGGAAAGGATCGAAATCACAAGTGCTCTGTGAAGAGCTCAAAATCATTGCAAACAAATATGATTAATTCTGGTTCAGGCAACACTCTCAGTCCTAACAGAACCTCTGGGACCAAGCAATTCAGGTCAAATGAAGCAGCAGGAGGAGTTAATTCTTCAGTAGAGATTCAGGCTTTGTCTAAAGAGATTACTGATCTCAAATCTGCAGTGGATCTCCTGGAAAAAGAAAGAGATTTCTACTTTGCAAAATTACGGGATATAGAAATTCTTTGTCAAACTCCAGAAGTGGAGAATTTCTCTATGTCTGTAGCAATTAAGAAGGTTTTGTATGCTGATGATCCAAAGGAATCAGCATTAGAAGAAGCTCAGGATTACCTTAATCAACGTTTGAATGCTGTGGAAGATGAAGCTGAAATTGAAGCCTGA

>Glyma17g10720.2   sequence type=CDS   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGTATAGGCATGATGGACAGTGCCTACTTTGTCGGCAGGAACCAGATTCTGACCTGGATCAACAACAGGCTCCACCTCAATCTCTCACGCATTGAGGAGGCTGCATCTGGGGCTGTGCAATGCCAGATGATGGATATGACGTTTCCAGGGGTTGTTCCAATGCACAAGGTGAACTTTGATGCAAAGACTGAGTATGATATGATCCAGAATTACAAAATTCTGCAGGACGTGTTCAATAAGCTGAAAATTGACAAACATGTTGAAGTTAGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTCCAGTGGCTGAAACGTTACTGTGATTCCGTGAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGAAGGGTAAAGGTTGGAAAGGATCGAAATCACAAGTGCTCTGTGAAGAGCTCAAAATCATTGCAAACAAATATGATTAATTCTGGTTCAGGCAACACTCTCAGTCCTAACAGAACCTCTGGGACCAAGCAATTCAGGTCAAATGAAGCAGCAGGAGGAGTTAATTCTTCAGTAGAGATTCAGGCTTTGTCTAAAGAGATGTCTGTAGCAATTAAGAAGGTTTTGTATGCTGATGATCCAAAGGAATCAGCATTAGAAGAAGCTCAGGATTACCTTAATCAACGTTTGAATGCTGTGGAAGATGAAGCTGAAATTGAAGCCTGA

>Glyma17g10720.3   sequence type=CDS   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGTATAGGCATGATGGACAGTGCCTACTTTGTCGGCAGGAACCAGATTCTGACCTGGATCAACAACAGGCTCCACCTCAATCTCTCACGCATTGAGGAGGCTGCATCTGGGGCTGTGCAATGCCAGATGATGGATATGACGTTTCCAGGGGTTGTTCCAATGCACAAGCATGTTGAAGTTAGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTCCAGTGGCTGAAACGTTACTGTGATTCCGTGAATGGTGGCATTATGAATGAGAACTATAATCCCGTGGAGCGAAGGGTAAAGGTTGGAAAGGATCGAAATCACAAGTGCTCTGTGAAGAGCTCAAAATCATTGCAAACAAATATGATTAATTCTGGTTCAGGCAACACTCTCAGTCCTAACAGAACCTCTGGGACCAAGCAATTCAGGTCAAATGAAGCAGCAGGAGGAGTTAATTCTTCAGTAGAGATTCAGGCTTTGTCTAAAGAGATTACTGATCTCAAATCTGCAGTGGATCTCCTGGAAAAAGAAAGAGATTTCTACTTTGCAAAATTACGGGATATAGAAATTCTTTGTCAAACTCCAGAAGTGGAGAATTTCTCTATGTCTGTAGCAATTAAGAAGGTTTTGTATGCTGATGATCCAAAGGAATCAGCATTAGAAGAAGCTCAGGATTACCTTAATCAACGTTTGAATGCTGTGGAAGATGAAGCTGAAATTGAAGCCTGA

Predicted protein sequences of Glyma17g10720

Limit To All Plant Sequences

>Glyma17g10720.1   sequence type=predicted peptide   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIGMMDSAYFVGRNQILTWINNRLHLNLSRIEEAASGAVQCQMMDMTFPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLKIDKHVEVSRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKVGKDRNHKCSVKSSKSLQTNMINSGSGNTLSPNRTSGTKQFRSNEAAGGVNSSVEIQALSKEITDLKSAVDLLEKERDFYFAKLRDIEILCQTPEVENFSMSVAIKKVLYADDPKESALEEAQDYLNQRLNAVEDEAEIEA*

>Glyma17g10720.2   sequence type=predicted peptide   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIGMMDSAYFVGRNQILTWINNRLHLNLSRIEEAASGAVQCQMMDMTFPGVVPMHKVNFDAKTEYDMIQNYKILQDVFNKLKIDKHVEVSRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKVGKDRNHKCSVKSSKSLQTNMINSGSGNTLSPNRTSGTKQFRSNEAAGGVNSSVEIQALSKEMSVAIKKVLYADDPKESALEEAQDYLNQRLNAVEDEAEIEA*

>Glyma17g10720.3   sequence type=predicted peptide   gene model=Glyma17g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIGMMDSAYFVGRNQILTWINNRLHLNLSRIEEAASGAVQCQMMDMTFPGVVPMHKHVEVSRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRVKVGKDRNHKCSVKSSKSLQTNMINSGSGNTLSPNRTSGTKQFRSNEAAGGVNSSVEIQALSKEITDLKSAVDLLEKERDFYFAKLRDIEILCQTPEVENFSMSVAIKKVLYADDPKESALEEAQDYLNQRLNAVEDEAEIEA*

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