Report for Sequence Feature Glyma17g10690
Feature Type: gene_model
Chromosome: Gm17
Start: 8035111
stop: 8037909
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g10690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G02870 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467
SoyBase E_val: 6.00E-144 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009610 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24413 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24413:SF217 Panther
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_Q6L3I4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Kelch repeat-containing F-box family protein, putative n=1 Tax=Solanum demissum RepID=Q6L3I4_SOLDE
SoyBase E_val: 1.00E-149 ISS
UniRef100_UPI000233E981 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E981 related cluster n=1 Tax=unknown RepID=UPI000233E981
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g10690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g10690
Paralog Evidence Comments
Glyma05g01195 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g10690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g098500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g10690
Coding sequences of Glyma17g10690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g10690.1 sequence type=CDS gene model=Glyma17g10690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTACTTTAGAACGCTTTTCAACTGAAGAAGATGAAAGACCTAGAAAGTTTTCGAAACTTTCAGATGATCCTGAGGAGGAGGATGCTATGCAGATTGATATGGGTTCTCTTTTAGCTTCCCAAGACCAAGGCAATGATCATCCGAAGCATGCACCCAAGAAGACGGGAAAGGTGGTGCGTGACCCAAAATGGCTTGTTAACGAGGATGTCTCAACCGGTGTTCTCCTTCACCTGTCAAGGTATGAGTATGGCTCAATTGCCTCACTGAACAGGAATTTCTTGTCTCTGATTAGATCAGGAGAACTCTACCGGGTCAGGCGGAAATTGGGAGTTGTAGAACACTGGGTTTACTTCTCTTGCAACATCCTTGAATGGGAGGTGTTTGATCCAATCAATGGCCATTGGATGCACTTGCCTAGAATGCCTTGCAATCCGTATGACTGCTTCGTGTTTTCTGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAGGGCAATAGAGGCTTGTATTGTTTATGAATATAGCCTCTTGACCAACAAATGGTCACATGGTATTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCCGCGAGCCACGGTGAAAAGGCCATAGTTGCTGGTGGGAGTGCAGAGGGCAAGATCTTGAGTGTGGCTGAGCTTTATAACTCAGACACCAAGACATGGGAGGTTCTTCCAAACATGAACAAGGCAAGAAAAATGTGTTCTGGCGTGTTCATGGATGGGAAATTTTATGCCATCGGTGGAATGGGGGAAGATGGTAATAGGCTGACATGTGGTGAGGAGTATGATTTGGATACAAAAGAATGGCGTGTGATTCCTAACATGGTGCCTCCGCGAATCCAGGGACCAGATGGCCCTGAGGCACCTCCTTTGGTTGCGGTTGTGAACAATGTGCTGTATGCTGCAGATTATGCACAGATGGTGATGAGGAAGTATGTGAAAGAGAGGAACAATTGGGTCTACGTTGGAGGTCTTCCTGAGGGAGCATCCTCTGTGAATGGTTGGGGATATGCATTTCGTGCATGTGGAGATCGAATTGTTGTTATTGGTGGGGAAAGGACTATGGGTGGTGAAAGTATGGTTGAAATCAATTCTTGGATCCCTGCTCAAGGTGCACCACAGTGGAACTTGCTTGCCAGAAGGTGCATTGGTGGGAACTTTGTGTATAATTGCGCAGTCATGGGATGCTGA
Predicted protein sequences of Glyma17g10690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g10690.1 sequence type=predicted peptide gene model=Glyma17g10690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTLERFSTEEDERPRKFSKLSDDPEEEDAMQIDMGSLLASQDQGNDHPKHAPKKTGKVVRDPKWLVNEDVSTGVLLHLSRYEYGSIASLNRNFLSLIRSGELYRVRRKLGVVEHWVYFSCNILEWEVFDPINGHWMHLPRMPCNPYDCFVFSDKESLAVGTELLVFGRAIEACIVYEYSLLTNKWSHGIQMSVPRCLFASASHGEKAIVAGGSAEGKILSVAELYNSDTKTWEVLPNMNKARKMCSGVFMDGKFYAIGGMGEDGNRLTCGEEYDLDTKEWRVIPNMVPPRIQGPDGPEAPPLVAVVNNVLYAADYAQMVMRKYVKERNNWVYVGGLPEGASSVNGWGYAFRACGDRIVVIGGERTMGGESMVEINSWIPAQGAPQWNLLARRCIGGNFVYNCAVMGC*